Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araJ and sbcC are separated by 125 nucleotides sbcC and sbcD overlap by 4 nucleotides
b0396: araJ - involved in either transport or processing of arabinose polymers (VIMSS), at 410,521 to 411,705
araJ
b0397: sbcC - exonuclease, dsDNA, ATP-dependent (NCBI), at 411,831 to 414,977
sbcC
b0398: sbcD - exonuclease, dsDNA, ATP-dependent (NCBI), at 414,974 to 416,176
sbcD
Position (kb) 411
412
413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.869 kb on - strand, within araJ at 410.869 kb on - strand, within araJ at 410.871 kb on + strand, within araJ at 410.880 kb on - strand, within araJ at 410.880 kb on - strand, within araJ at 410.882 kb on + strand, within araJ at 410.882 kb on + strand, within araJ at 410.890 kb on - strand, within araJ at 410.890 kb on - strand, within araJ at 410.898 kb on - strand, within araJ at 410.898 kb on - strand, within araJ at 410.906 kb on - strand, within araJ at 410.921 kb on - strand, within araJ at 410.921 kb on - strand, within araJ at 410.923 kb on - strand, within araJ at 410.923 kb on - strand, within araJ at 410.961 kb on - strand, within araJ at 410.964 kb on + strand, within araJ at 410.964 kb on + strand, within araJ at 410.964 kb on + strand, within araJ at 410.972 kb on - strand, within araJ at 410.972 kb on - strand, within araJ at 410.973 kb on - strand, within araJ at 410.973 kb on - strand, within araJ at 410.983 kb on - strand, within araJ at 410.985 kb on + strand, within araJ at 411.030 kb on + strand, within araJ at 411.037 kb on - strand, within araJ at 411.037 kb on - strand, within araJ at 411.037 kb on - strand, within araJ at 411.037 kb on - strand, within araJ at 411.041 kb on + strand, within araJ at 411.041 kb on + strand, within araJ at 411.044 kb on - strand, within araJ at 411.044 kb on - strand, within araJ at 411.049 kb on + strand, within araJ at 411.063 kb on + strand, within araJ at 411.073 kb on + strand, within araJ at 411.079 kb on - strand, within araJ at 411.095 kb on + strand, within araJ at 411.101 kb on - strand, within araJ at 411.101 kb on - strand, within araJ at 411.105 kb on + strand, within araJ at 411.113 kb on - strand, within araJ at 411.113 kb on - strand, within araJ at 411.113 kb on - strand, within araJ at 411.113 kb on - strand, within araJ at 411.141 kb on + strand, within araJ at 411.141 kb on + strand, within araJ at 411.141 kb on + strand, within araJ at 411.188 kb on + strand, within araJ at 411.211 kb on - strand, within araJ at 411.211 kb on - strand, within araJ at 411.230 kb on - strand, within araJ at 411.273 kb on - strand, within araJ at 411.273 kb on - strand, within araJ at 411.285 kb on - strand, within araJ at 411.285 kb on - strand, within araJ at 411.294 kb on - strand, within araJ at 411.417 kb on - strand, within araJ at 411.441 kb on + strand, within araJ at 411.441 kb on + strand, within araJ at 411.503 kb on - strand, within araJ at 411.561 kb on + strand, within araJ at 411.663 kb on + strand at 411.663 kb on + strand at 411.736 kb on + strand at 411.791 kb on + strand at 411.866 kb on + strand at 411.927 kb on + strand at 411.935 kb on - strand at 412.023 kb on + strand at 412.069 kb on + strand at 412.187 kb on + strand, within sbcC at 412.187 kb on + strand, within sbcC at 412.205 kb on + strand, within sbcC at 412.205 kb on + strand, within sbcC at 412.315 kb on - strand, within sbcC at 412.315 kb on - strand, within sbcC at 412.331 kb on + strand, within sbcC at 412.331 kb on + strand, within sbcC at 412.341 kb on + strand, within sbcC at 412.341 kb on + strand, within sbcC at 412.481 kb on - strand, within sbcC at 412.485 kb on + strand, within sbcC at 412.636 kb on - strand, within sbcC at 412.638 kb on + strand, within sbcC at 412.638 kb on + strand, within sbcC at 412.643 kb on + strand, within sbcC at 412.685 kb on + strand, within sbcC at 412.685 kb on + strand, within sbcC at 412.796 kb on - strand, within sbcC at 412.859 kb on - strand, within sbcC at 412.932 kb on + strand, within sbcC at 412.932 kb on + strand, within sbcC at 413.124 kb on - strand, within sbcC at 413.180 kb on + strand, within sbcC at 413.209 kb on + strand, within sbcC at 413.279 kb on - strand, within sbcC at 413.337 kb on + strand, within sbcC at 413.387 kb on - strand, within sbcC at 413.387 kb on - strand, within sbcC at 413.438 kb on - strand, within sbcC at 413.458 kb on + strand, within sbcC at 413.458 kb on + strand, within sbcC at 413.473 kb on + strand, within sbcC at 413.473 kb on + strand, within sbcC at 413.712 kb on + strand, within sbcC at 413.712 kb on + strand, within sbcC at 413.737 kb on - strand, within sbcC at 414.176 kb on + strand, within sbcC at 414.375 kb on + strand, within sbcC at 414.380 kb on + strand, within sbcC at 414.380 kb on + strand, within sbcC at 414.413 kb on - strand, within sbcC at 414.476 kb on + strand, within sbcC at 414.517 kb on - strand, within sbcC at 414.552 kb on - strand, within sbcC at 414.552 kb on - strand, within sbcC at 414.734 kb on + strand at 414.808 kb on + strand at 414.808 kb on + strand at 414.839 kb on + strand at 415.007 kb on - strand at 415.073 kb on - strand at 415.292 kb on + strand, within sbcD at 415.292 kb on + strand, within sbcD at 415.338 kb on + strand, within sbcD at 415.338 kb on + strand, within sbcD at 415.338 kb on + strand, within sbcD at 415.357 kb on - strand, within sbcD at 415.357 kb on - strand, within sbcD at 415.461 kb on + strand, within sbcD at 415.461 kb on + strand, within sbcD at 415.518 kb on + strand, within sbcD at 415.518 kb on + strand, within sbcD at 415.598 kb on + strand, within sbcD at 415.602 kb on + strand, within sbcD at 415.679 kb on + strand, within sbcD at 415.680 kb on + strand, within sbcD at 415.893 kb on - strand, within sbcD
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 410,869 - araJ b0396 0.29 -0.7 410,869 - araJ b0396 0.29 +0.3 410,871 + araJ b0396 0.30 -0.4 410,880 - araJ b0396 0.30 -1.4 410,880 - araJ b0396 0.30 +1.0 410,882 + araJ b0396 0.30 +0.9 410,882 + araJ b0396 0.30 +0.9 410,890 - araJ b0396 0.31 +0.9 410,890 - araJ b0396 0.31 -1.7 410,898 - araJ b0396 0.32 -0.3 410,898 - araJ b0396 0.32 -0.1 410,906 - araJ b0396 0.32 +0.9 410,921 - araJ b0396 0.34 +1.1 410,921 - araJ b0396 0.34 +0.9 410,923 - araJ b0396 0.34 +0.1 410,923 - araJ b0396 0.34 -0.0 410,961 - araJ b0396 0.37 +0.4 410,964 + araJ b0396 0.37 -0.4 410,964 + araJ b0396 0.37 +0.3 410,964 + araJ b0396 0.37 +2.5 410,972 - araJ b0396 0.38 -1.5 410,972 - araJ b0396 0.38 +0.2 410,973 - araJ b0396 0.38 -1.3 410,973 - araJ b0396 0.38 -1.3 410,983 - araJ b0396 0.39 +0.2 410,985 + araJ b0396 0.39 +0.3 411,030 + araJ b0396 0.43 -0.5 411,037 - araJ b0396 0.44 -0.2 411,037 - araJ b0396 0.44 +0.3 411,037 - araJ b0396 0.44 +0.4 411,037 - araJ b0396 0.44 -3.1 411,041 + araJ b0396 0.44 +0.6 411,041 + araJ b0396 0.44 -0.5 411,044 - araJ b0396 0.44 -0.3 411,044 - araJ b0396 0.44 -1.5 411,049 + araJ b0396 0.45 -2.0 411,063 + araJ b0396 0.46 +0.3 411,073 + araJ b0396 0.47 -1.1 411,079 - araJ b0396 0.47 +0.7 411,095 + araJ b0396 0.48 -0.9 411,101 - araJ b0396 0.49 -0.8 411,101 - araJ b0396 0.49 +0.0 411,105 + araJ b0396 0.49 -0.6 411,113 - araJ b0396 0.50 -1.3 411,113 - araJ b0396 0.50 +0.0 411,113 - araJ b0396 0.50 -0.1 411,113 - araJ b0396 0.50 -0.4 411,141 + araJ b0396 0.52 +1.2 411,141 + araJ b0396 0.52 +0.2 411,141 + araJ b0396 0.52 -1.3 411,188 + araJ b0396 0.56 -1.1 411,211 - araJ b0396 0.58 -0.2 411,211 - araJ b0396 0.58 -1.3 411,230 - araJ b0396 0.60 -1.7 411,273 - araJ b0396 0.63 -1.8 411,273 - araJ b0396 0.63 -1.0 411,285 - araJ b0396 0.64 -0.5 411,285 - araJ b0396 0.64 +0.0 411,294 - araJ b0396 0.65 +0.1 411,417 - araJ b0396 0.76 -0.6 411,441 + araJ b0396 0.78 -0.3 411,441 + araJ b0396 0.78 +1.2 411,503 - araJ b0396 0.83 +0.5 411,561 + araJ b0396 0.88 -0.4 411,663 + -1.5 411,663 + +0.0 411,736 + +0.9 411,791 + -1.5 411,866 + +0.3 411,927 + +0.7 411,935 - -1.3 412,023 + +0.3 412,069 + +1.7 412,187 + sbcC b0397 0.11 -0.1 412,187 + sbcC b0397 0.11 +2.5 412,205 + sbcC b0397 0.12 +1.5 412,205 + sbcC b0397 0.12 -0.3 412,315 - sbcC b0397 0.15 -0.1 412,315 - sbcC b0397 0.15 +0.7 412,331 + sbcC b0397 0.16 +0.2 412,331 + sbcC b0397 0.16 +2.2 412,341 + sbcC b0397 0.16 +0.2 412,341 + sbcC b0397 0.16 +0.9 412,481 - sbcC b0397 0.21 -0.4 412,485 + sbcC b0397 0.21 +2.2 412,636 - sbcC b0397 0.26 +0.8 412,638 + sbcC b0397 0.26 +0.1 412,638 + sbcC b0397 0.26 +0.7 412,643 + sbcC b0397 0.26 +0.2 412,685 + sbcC b0397 0.27 -0.9 412,685 + sbcC b0397 0.27 +0.6 412,796 - sbcC b0397 0.31 +0.2 412,859 - sbcC b0397 0.33 +2.6 412,932 + sbcC b0397 0.35 -2.9 412,932 + sbcC b0397 0.35 -0.3 413,124 - sbcC b0397 0.41 +0.4 413,180 + sbcC b0397 0.43 -0.4 413,209 + sbcC b0397 0.44 +0.1 413,279 - sbcC b0397 0.46 +1.1 413,337 + sbcC b0397 0.48 +1.0 413,387 - sbcC b0397 0.49 +0.6 413,387 - sbcC b0397 0.49 +1.3 413,438 - sbcC b0397 0.51 +0.3 413,458 + sbcC b0397 0.52 -0.0 413,458 + sbcC b0397 0.52 +0.5 413,473 + sbcC b0397 0.52 +0.9 413,473 + sbcC b0397 0.52 +0.8 413,712 + sbcC b0397 0.60 +0.2 413,712 + sbcC b0397 0.60 -1.0 413,737 - sbcC b0397 0.61 -2.2 414,176 + sbcC b0397 0.75 +1.9 414,375 + sbcC b0397 0.81 +0.2 414,380 + sbcC b0397 0.81 -0.3 414,380 + sbcC b0397 0.81 -0.1 414,413 - sbcC b0397 0.82 +1.2 414,476 + sbcC b0397 0.84 +0.6 414,517 - sbcC b0397 0.85 +1.7 414,552 - sbcC b0397 0.86 +1.9 414,552 - sbcC b0397 0.86 +0.8 414,734 + +0.4 414,808 + -0.9 414,808 + +2.2 414,839 + -0.1 415,007 - +0.4 415,073 - +1.1 415,292 + sbcD b0398 0.26 +0.9 415,292 + sbcD b0398 0.26 +0.3 415,338 + sbcD b0398 0.30 -1.3 415,338 + sbcD b0398 0.30 +1.2 415,338 + sbcD b0398 0.30 +1.6 415,357 - sbcD b0398 0.32 +1.8 415,357 - sbcD b0398 0.32 +0.5 415,461 + sbcD b0398 0.40 +0.6 415,461 + sbcD b0398 0.40 +0.5 415,518 + sbcD b0398 0.45 -0.8 415,518 + sbcD b0398 0.45 -0.4 415,598 + sbcD b0398 0.52 -0.2 415,602 + sbcD b0398 0.52 -1.9 415,679 + sbcD b0398 0.59 -2.0 415,680 + sbcD b0398 0.59 -0.5 415,893 - sbcD b0398 0.76 +0.0
Or see this region's nucleotide sequence