Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeO and asnU are separated by 160 nucleotides asnU and cbl are separated by 37 nucleotides cbl and nac are separated by 101 nucleotides
b1985: yeeO - predicted multidrug efflux system (RefSeq), at 2,056,227 to 2,057,714
yeeO
b1986: asnU - tRNA-Asn (NCBI), at 2,057,875 to 2,057,950
asnU
b1987: cbl - DNA-binding transcriptional activator of cysteine biosynthesis (NCBI), at 2,057,988 to 2,058,938
cbl
b1988: nac - DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI), at 2,059,040 to 2,059,957
nac
Position (kb)
2057
2058
2059 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2057.027 kb on + strand, within yeeO at 2057.027 kb on + strand, within yeeO at 2057.033 kb on + strand, within yeeO at 2057.035 kb on - strand, within yeeO at 2057.120 kb on - strand, within yeeO at 2057.151 kb on - strand, within yeeO at 2057.181 kb on - strand, within yeeO at 2057.181 kb on - strand, within yeeO at 2057.206 kb on - strand, within yeeO at 2057.213 kb on - strand, within yeeO at 2057.213 kb on - strand, within yeeO at 2057.232 kb on - strand, within yeeO at 2057.367 kb on - strand, within yeeO at 2057.585 kb on + strand at 2057.849 kb on + strand at 2058.044 kb on + strand at 2058.057 kb on - strand at 2058.057 kb on - strand at 2058.093 kb on + strand, within cbl at 2058.094 kb on - strand, within cbl at 2058.096 kb on - strand, within cbl at 2058.096 kb on - strand, within cbl at 2058.123 kb on + strand, within cbl at 2058.218 kb on - strand, within cbl at 2058.275 kb on + strand, within cbl at 2058.575 kb on - strand, within cbl at 2058.618 kb on + strand, within cbl at 2058.644 kb on + strand, within cbl at 2058.755 kb on + strand, within cbl at 2058.755 kb on + strand, within cbl at 2058.755 kb on + strand, within cbl at 2058.813 kb on + strand, within cbl at 2058.814 kb on + strand, within cbl at 2058.891 kb on + strand at 2058.947 kb on - strand at 2059.036 kb on + strand at 2059.095 kb on - strand at 2059.095 kb on - strand at 2059.170 kb on + strand, within nac at 2059.188 kb on - strand, within nac at 2059.402 kb on + strand, within nac at 2059.487 kb on + strand, within nac at 2059.541 kb on - strand, within nac at 2059.584 kb on + strand, within nac at 2059.584 kb on + strand, within nac at 2059.643 kb on + strand, within nac at 2059.714 kb on - strand, within nac at 2059.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 2,057,027 + yeeO b1985 0.54 +3.2 2,057,027 + yeeO b1985 0.54 +0.6 2,057,033 + yeeO b1985 0.54 +2.2 2,057,035 - yeeO b1985 0.54 +0.9 2,057,120 - yeeO b1985 0.60 +1.3 2,057,151 - yeeO b1985 0.62 +0.3 2,057,181 - yeeO b1985 0.64 -0.2 2,057,181 - yeeO b1985 0.64 -0.0 2,057,206 - yeeO b1985 0.66 +0.6 2,057,213 - yeeO b1985 0.66 +0.6 2,057,213 - yeeO b1985 0.66 +0.3 2,057,232 - yeeO b1985 0.68 -2.0 2,057,367 - yeeO b1985 0.77 -0.2 2,057,585 + -0.6 2,057,849 + -0.9 2,058,044 + -0.8 2,058,057 - -0.1 2,058,057 - -0.7 2,058,093 + cbl b1987 0.11 -0.6 2,058,094 - cbl b1987 0.11 +1.2 2,058,096 - cbl b1987 0.11 -2.2 2,058,096 - cbl b1987 0.11 +0.6 2,058,123 + cbl b1987 0.14 -0.1 2,058,218 - cbl b1987 0.24 +0.2 2,058,275 + cbl b1987 0.30 +3.5 2,058,575 - cbl b1987 0.62 +1.2 2,058,618 + cbl b1987 0.66 -1.1 2,058,644 + cbl b1987 0.69 +0.6 2,058,755 + cbl b1987 0.81 +0.6 2,058,755 + cbl b1987 0.81 +1.9 2,058,755 + cbl b1987 0.81 +0.9 2,058,813 + cbl b1987 0.87 -2.1 2,058,814 + cbl b1987 0.87 +0.8 2,058,891 + -0.7 2,058,947 - +0.4 2,059,036 + -0.8 2,059,095 - -0.0 2,059,095 - -0.0 2,059,170 + nac b1988 0.14 +1.5 2,059,188 - nac b1988 0.16 -0.1 2,059,402 + nac b1988 0.39 -1.0 2,059,487 + nac b1988 0.49 +0.1 2,059,541 - nac b1988 0.55 -0.7 2,059,584 + nac b1988 0.59 +0.2 2,059,584 + nac b1988 0.59 -0.0 2,059,643 + nac b1988 0.66 -1.1 2,059,714 - nac b1988 0.73 -0.0 2,059,896 + +0.0
Or see this region's nucleotide sequence