Strain Fitness in Escherichia coli BW25113 around b3753

Experiment: LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
3,935,280	+				-1.1
3,935,420	+	rbsK	b3752	0.11	+3.2
3,935,420	+	rbsK	b3752	0.11	+4.3
3,935,469	-	rbsK	b3752	0.16	+5.3
3,935,485	-	rbsK	b3752	0.18	+4.7
3,935,493	-	rbsK	b3752	0.19	+4.4
3,935,517	-	rbsK	b3752	0.22	+4.8
3,935,517	-	rbsK	b3752	0.22	+5.8
3,935,519	+	rbsK	b3752	0.22	+2.9
3,935,519	+	rbsK	b3752	0.22	+3.2
3,935,522	-	rbsK	b3752	0.22	+5.4
3,935,522	-	rbsK	b3752	0.22	+5.2
3,935,542	-	rbsK	b3752	0.24	+5.8
3,935,542	-	rbsK	b3752	0.24	+5.6
3,935,551	+	rbsK	b3752	0.25	+2.8
3,935,551	+	rbsK	b3752	0.25	+3.0
3,935,560	-	rbsK	b3752	0.26	+5.3
3,935,577	-	rbsK	b3752	0.28	+5.6
3,935,650	+	rbsK	b3752	0.36	+2.2
3,935,656	-	rbsK	b3752	0.36	+5.9
3,935,661	+	rbsK	b3752	0.37	+2.3
3,935,666	+	rbsK	b3752	0.38	+4.7
3,935,669	-	rbsK	b3752	0.38	+5.1
3,935,669	-	rbsK	b3752	0.38	+6.0
3,935,669	-	rbsK	b3752	0.38	+4.7
3,935,711	+	rbsK	b3752	0.42	+2.3
3,935,742	+	rbsK	b3752	0.46	-0.4
3,935,798	-	rbsK	b3752	0.52	+4.7
3,935,798	-	rbsK	b3752	0.52	+5.3
3,935,808	+	rbsK	b3752	0.53	+1.6
3,935,942	+	rbsK	b3752	0.67	+1.8
3,935,946	+	rbsK	b3752	0.68	+0.7
3,935,946	+	rbsK	b3752	0.68	+0.7
3,935,955	-	rbsK	b3752	0.69	+5.6
3,935,969	+	rbsK	b3752	0.70	+1.1
3,935,969	+	rbsK	b3752	0.70	+0.4
3,935,977	-	rbsK	b3752	0.71	+5.2
3,935,977	-	rbsK	b3752	0.71	+5.9
3,935,983	+	rbsK	b3752	0.72	-0.7
3,936,007	-	rbsK	b3752	0.74	+4.5
3,936,007	-	rbsK	b3752	0.74	+5.9
3,936,007	-	rbsK	b3752	0.74	+4.8
3,936,009	-	rbsK	b3752	0.74	+5.3
3,936,028	-	rbsK	b3752	0.76	+5.2
3,936,028	-	rbsK	b3752	0.76	+5.6
3,936,048	+	rbsK	b3752	0.79	+0.2
3,936,055	-	rbsK	b3752	0.79	+6.3
3,936,074	-	rbsK	b3752	0.81	+5.5
3,936,074	-	rbsK	b3752	0.81	+5.5
3,936,082	+	rbsK	b3752	0.82	+1.2
3,936,082	+	rbsK	b3752	0.82	+1.0
3,936,197	+				+1.3
3,936,338	-				+5.6
3,936,338	-				+5.9
3,936,395	+	rbsR	b3753	0.15	+6.1
3,936,407	+	rbsR	b3753	0.16	+5.2
3,936,415	-	rbsR	b3753	0.17	+7.9
3,936,444	-	rbsR	b3753	0.20	+5.9
3,936,447	-	rbsR	b3753	0.20	+5.4
3,936,456	+	rbsR	b3753	0.21	+5.3
3,936,456	+	rbsR	b3753	0.21	+5.6
3,936,463	-	rbsR	b3753	0.21	+5.7
3,936,470	+	rbsR	b3753	0.22	+6.3
3,936,470	+	rbsR	b3753	0.22	+5.6
3,936,473	-	rbsR	b3753	0.22	+4.4
3,936,473	-	rbsR	b3753	0.22	+5.4
3,936,496	-	rbsR	b3753	0.25	+5.7
3,936,496	-	rbsR	b3753	0.25	+4.6
3,936,545	+	rbsR	b3753	0.30	+5.3
3,936,659	+	rbsR	b3753	0.41	+5.8
3,936,667	+	rbsR	b3753	0.42	+6.4
3,936,667	+	rbsR	b3753	0.42	+5.1
3,936,667	+	rbsR	b3753	0.42	+4.8
3,936,684	-	rbsR	b3753	0.44	+4.4
3,936,684	-	rbsR	b3753	0.44	+4.8
3,936,686	+	rbsR	b3753	0.44	+5.4
3,936,723	-	rbsR	b3753	0.48	+5.3
3,936,726	-	rbsR	b3753	0.48	+4.6
3,936,763	-	rbsR	b3753	0.52	+4.7
3,936,769	+	rbsR	b3753	0.52	+5.1
3,936,794	+	rbsR	b3753	0.55	+5.9
3,936,842	-	rbsR	b3753	0.60	+5.9
3,936,868	+	rbsR	b3753	0.62	+5.7
3,936,868	+	rbsR	b3753	0.62	+5.5
3,936,868	+	rbsR	b3753	0.62	+6.0
3,936,875	+	rbsR	b3753	0.63	+6.0
3,936,876	-	rbsR	b3753	0.63	+6.0
3,936,876	-	rbsR	b3753	0.63	+5.7
3,936,878	+	rbsR	b3753	0.63	+5.3
3,936,878	+	rbsR	b3753	0.63	+5.2
3,936,943	+	rbsR	b3753	0.70	+5.2
3,936,953	-	rbsR	b3753	0.71	+5.5
3,936,953	-	rbsR	b3753	0.71	+6.1
3,936,989	+	rbsR	b3753	0.74	+5.0
3,936,989	+	rbsR	b3753	0.74	+5.7
3,936,990	+	rbsR	b3753	0.75	+4.7
3,936,992	+	rbsR	b3753	0.75	+4.8
3,937,039	+	rbsR	b3753	0.79	+5.0
3,937,055	-	rbsR	b3753	0.81	+6.5
3,937,101	+	rbsR	b3753	0.86	+4.9
3,937,124	-	rbsR	b3753	0.88	+5.3
3,937,124	-	rbsR	b3753	0.88	+5.7
3,937,130	-	rbsR	b3753	0.89	+5.5
3,937,137	+	rbsR	b3753	0.89	+6.4
3,937,174	+				+6.6
3,937,174	+				+6.4
3,937,177	-				+5.1
3,937,184	-				+4.3
3,937,186	+				+4.8
3,937,186	+				+5.6
3,937,201	+				+4.1
3,937,205	+				+5.5
3,937,244	-				-0.6
3,937,244	-				-0.4
3,937,312	-				+0.1
3,937,318	-				+0.4
3,937,318	-				-1.4
3,937,342	-				-0.7
3,937,365	+	hsrA	b3754	0.11	-0.7
3,937,373	+	hsrA	b3754	0.12	+0.6
3,937,406	+	hsrA	b3754	0.14	-0.2
3,937,418	+	hsrA	b3754	0.15	+0.1
3,937,458	+	hsrA	b3754	0.18	-0.0
3,937,458	-	hsrA	b3754	0.18	+0.0
3,937,467	+	hsrA	b3754	0.18	-0.5
3,937,470	-	hsrA	b3754	0.18	+0.0
3,937,470	-	hsrA	b3754	0.18	+0.2
3,937,498	+	hsrA	b3754	0.20	-0.6
3,937,506	+	hsrA	b3754	0.21	+1.0
3,937,506	-	hsrA	b3754	0.21	+0.5
3,937,506	-	hsrA	b3754	0.21	-0.2
3,937,511	-	hsrA	b3754	0.21	+0.7
3,937,523	-	hsrA	b3754	0.22	-2.7
3,937,533	-	hsrA	b3754	0.23	-0.9
3,937,533	-	hsrA	b3754	0.23	-0.1
3,937,541	+	hsrA	b3754	0.23	-0.3
3,937,549	-	hsrA	b3754	0.24	-0.7
3,937,570	-	hsrA	b3754	0.25	-0.6
3,937,570	-	hsrA	b3754	0.25	+0.3
3,937,579	-	hsrA	b3754	0.26	+0.5
3,937,579	-	hsrA	b3754	0.26	-0.2
3,937,592	-	hsrA	b3754	0.27	+0.0
3,937,592	-	hsrA	b3754	0.27	-0.5
3,937,596	+	hsrA	b3754	0.27	-0.6
3,937,630	+	hsrA	b3754	0.30	-0.2
3,937,647	-	hsrA	b3754	0.31	-0.1
3,937,647	-	hsrA	b3754	0.31	+1.1
3,937,651	+	hsrA	b3754	0.31	-1.0
3,937,654	-	hsrA	b3754	0.31	-0.9
3,937,665	-	hsrA	b3754	0.32	+0.3
3,937,667	+	hsrA	b3754	0.32	+1.2
3,937,725	+	hsrA	b3754	0.36	-0.6
3,937,759	+	hsrA	b3754	0.39	+1.4
3,937,789	+	hsrA	b3754	0.41	-1.9
3,937,789	+	hsrA	b3754	0.41	+1.4
3,937,792	+	hsrA	b3754	0.41	+1.3
3,937,792	+	hsrA	b3754	0.41	-0.6
3,937,792	+	hsrA	b3754	0.41	+0.8
3,937,797	-	hsrA	b3754	0.41	-0.9
3,937,797	-	hsrA	b3754	0.41	+0.1
3,937,800	-	hsrA	b3754	0.41	+0.0
3,937,800	-	hsrA	b3754	0.41	-0.6
3,937,800	-	hsrA	b3754	0.41	-0.3
3,937,832	-	hsrA	b3754	0.44	-0.1
3,937,995	-	hsrA	b3754	0.55	-0.5
3,937,995	-	hsrA	b3754	0.55	+0.0
3,938,052	-	hsrA	b3754	0.59	+0.7
3,938,059	+	hsrA	b3754	0.60	-0.0
3,938,059	+	hsrA	b3754	0.60	-0.2
3,938,106	+	hsrA	b3754	0.63	-0.2
3,938,106	+	hsrA	b3754	0.63	+0.9
3,938,149	-	hsrA	b3754	0.66	-0.4
3,938,154	+	hsrA	b3754	0.66	+0.4
3,938,207	-	hsrA	b3754	0.70	-1.6