Strain Fitness in Escherichia coli BW25113 around b3281

Experiment: LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
3,427,047	+				+0.2
3,427,074	-				+1.0
3,427,076	+				-0.7
3,427,283	-				-1.1
3,427,283	-				-0.2
3,427,308	+				-0.3
3,427,333	+	yrdA	b3279	0.14	-0.4
3,427,371	+	yrdA	b3279	0.20	-0.1
3,427,394	+				+0.8
3,427,399	+	yrdA	b3279	0.25	-0.7
3,427,407	-	yrdA	b3279	0.27	+0.2
3,427,417	-	yrdA	b3279	0.29	-0.6
3,427,424	-	yrdA	b3279	0.30	-2.1
3,427,430	+	yrdA	b3279	0.31	+1.0
3,427,450	+	yrdA	b3279	0.35	-0.1
3,427,452	+	yrdA	b3279	0.35	-0.0
3,427,452	+	yrdA	b3279	0.35	-0.3
3,427,452	+	yrdA	b3279	0.35	-0.9
3,427,458	-	yrdA	b3279	0.36	-0.1
3,427,479	-	yrdA	b3279	0.40	+0.1
3,427,494	+	yrdA	b3279	0.43	+0.8
3,427,494	+	yrdA	b3279	0.43	-0.2
3,427,503	-	yrdA	b3279	0.44	-0.1
3,427,503	-	yrdA	b3279	0.44	-0.7
3,427,514	+	yrdA	b3279	0.46	-0.7
3,427,514	+	yrdA	b3279	0.46	-0.1
3,427,523	-	yrdA	b3279	0.48	-0.5
3,427,534	-	yrdA	b3279	0.50	-0.6
3,427,542	-				+1.4
3,427,542	-	yrdA	b3279	0.51	+0.8
3,427,545	+	yrdA	b3279	0.52	+0.3
3,427,548	-	yrdA	b3279	0.52	-0.4
3,427,561	-	yrdA	b3279	0.55	-1.2
3,427,575	-	yrdA	b3279	0.57	-1.2
3,427,609	-	yrdA	b3279	0.63	-0.4
3,427,609	-	yrdA	b3279	0.63	-1.5
3,427,610	-	yrdA	b3279	0.63	-0.3
3,427,621	+	yrdA	b3279	0.65	+0.2
3,427,621	+	yrdA	b3279	0.65	-0.5
3,427,629	-	yrdA	b3279	0.67	-0.7
3,427,647	-	yrdA	b3279	0.70	+0.3
3,427,673	+	yrdA	b3279	0.75	-0.1
3,427,675	+	yrdA	b3279	0.75	-0.2
3,427,684	+	yrdA	b3279	0.77	-0.2
3,427,684	+	yrdA	b3279	0.77	-0.3
3,427,685	-	yrdA	b3279	0.77	+0.2
3,427,686	+	yrdA	b3279	0.77	-0.0
3,427,686	+	yrdA	b3279	0.77	+1.2
3,427,686	+	yrdA	b3279	0.77	-0.1
3,427,686	+	yrdA	b3279	0.77	-0.7
3,427,694	+	yrdA	b3279	0.79	+0.1
3,427,694	+	yrdA	b3279	0.79	+0.6
3,427,702	-	yrdA	b3279	0.80	-0.5
3,427,721	-	yrdA	b3279	0.83	+0.2
3,427,734	-	yrdA	b3279	0.86	+0.1
3,427,734	-	yrdA	b3279	0.86	+0.9
3,427,740	+	yrdA	b3279	0.87	-0.1
3,427,743	-	yrdA	b3279	0.87	+0.0
3,427,743	-	yrdA	b3279	0.87	+0.5
3,427,791	+				-0.3
3,427,795	+				+0.9
3,427,824	-	yrdB	b3280	0.14	-0.5
3,427,895	+	yrdB	b3280	0.41	-1.1
3,427,932	-	yrdB	b3280	0.56	-1.0
3,427,932	-	yrdB	b3280	0.56	+0.2
3,427,950	+	yrdB	b3280	0.63	-1.9
3,427,973	-	yrdB	b3280	0.72	-0.1
3,428,017	-	yrdB	b3280	0.89	+0.5
3,428,017	-	yrdB	b3280	0.89	-0.5
3,428,077	-				+0.2
3,428,077	-				-0.3
3,428,092	+				-2.7
3,428,092	+				-2.1
3,428,098	-				-2.0
3,428,098	-				-2.9
3,428,110	+				-3.2
3,428,179	+	aroE	b3281	0.17	-4.2
3,428,179	+	aroE	b3281	0.17	-2.2
3,428,182	-	aroE	b3281	0.17	-3.1
3,428,187	-	aroE	b3281	0.18	-3.9
3,428,187	-	aroE	b3281	0.18	-2.6
3,428,219	+	aroE	b3281	0.22	-4.2
3,428,242	-	aroE	b3281	0.24	-2.3
3,428,249	+	aroE	b3281	0.25	-1.4
3,428,254	-	aroE	b3281	0.26	-3.2
3,428,262	-	aroE	b3281	0.27	-3.7
3,428,275	-	aroE	b3281	0.28	-2.8
3,428,282	+	aroE	b3281	0.29	-3.6
3,428,282	+	aroE	b3281	0.29	-1.6
3,428,289	+	aroE	b3281	0.30	-1.5
3,428,289	+	aroE	b3281	0.30	-2.5
3,428,293	-	aroE	b3281	0.31	-4.5
3,428,297	-	aroE	b3281	0.31	-3.1
3,428,297	-	aroE	b3281	0.31	-1.9
3,428,302	-	aroE	b3281	0.32	-3.0
3,428,302	-	aroE	b3281	0.32	-4.0
3,428,309	+	aroE	b3281	0.33	-3.5
3,428,309	+	aroE	b3281	0.33	-3.2
3,428,313	+	aroE	b3281	0.33	-2.8
3,428,333	+	aroE	b3281	0.36	-1.8
3,428,337	-	aroE	b3281	0.36	-2.9
3,428,337	-	aroE	b3281	0.36	-2.2
3,428,338	+	aroE	b3281	0.36	-0.5
3,428,356	+	aroE	b3281	0.38	-2.3
3,428,356	+	aroE	b3281	0.38	-3.8
3,428,369	-	aroE	b3281	0.40	-3.6
3,428,369	-	aroE	b3281	0.40	-3.6
3,428,425	+	aroE	b3281	0.47	-4.1
3,428,426	-	aroE	b3281	0.47	+1.4
3,428,428	+	aroE	b3281	0.47	-4.4
3,428,428	+	aroE	b3281	0.47	-1.8
3,428,435	+	aroE	b3281	0.48	-1.8
3,428,435	+	aroE	b3281	0.48	-3.6
3,428,435	+	aroE	b3281	0.48	-2.8
3,428,435	+	aroE	b3281	0.48	-2.6
3,428,435	+	aroE	b3281	0.48	-1.8
3,428,435	+	aroE	b3281	0.48	-2.9
3,428,438	-	aroE	b3281	0.48	-2.6
3,428,443	-	aroE	b3281	0.49	-2.7
3,428,443	-	aroE	b3281	0.49	-0.5
3,428,443	-	aroE	b3281	0.49	-3.7
3,428,461	-	aroE	b3281	0.51	-1.6
3,428,463	-	aroE	b3281	0.51	-2.6
3,428,463	-	aroE	b3281	0.51	-3.5
3,428,480	-	aroE	b3281	0.53	-4.3
3,428,502	-	aroE	b3281	0.56	-2.2
3,428,502	-	aroE	b3281	0.56	-3.1
3,428,511	-	aroE	b3281	0.57	-4.2
3,428,545	+	aroE	b3281	0.61	-2.6
3,428,546	-	aroE	b3281	0.62	-4.6
3,428,548	-	aroE	b3281	0.62	-2.4
3,428,553	+	aroE	b3281	0.62	-4.3
3,428,553	+	aroE	b3281	0.62	-2.8
3,428,566	-	aroE	b3281	0.64	-2.3
3,428,566	-	aroE	b3281	0.64	-0.9
3,428,567	-	aroE	b3281	0.64	-4.8
3,428,580	-	aroE	b3281	0.66	-4.1
3,428,593	-	aroE	b3281	0.67	-2.4
3,428,608	-	aroE	b3281	0.69	-4.9
3,428,608	-	aroE	b3281	0.69	-2.6
3,428,615	+	aroE	b3281	0.70	-4.6
3,428,623	-	aroE	b3281	0.71	-2.4
3,428,623	-	aroE	b3281	0.71	-3.4
3,428,623	-	aroE	b3281	0.71	-3.4
3,428,623	-	aroE	b3281	0.71	-2.3
3,428,632	+	aroE	b3281	0.72	-1.5
3,428,638	+	aroE	b3281	0.73	-4.5
3,428,693	+	aroE	b3281	0.79	-2.5
3,428,711	-	aroE	b3281	0.82	-2.2
3,428,711	-	aroE	b3281	0.82	-2.9
3,428,716	+	aroE	b3281	0.82	-4.8
3,428,717	+	aroE	b3281	0.82	-1.4
3,428,717	+	aroE	b3281	0.82	-2.5
3,428,726	+	aroE	b3281	0.84	-1.6
3,428,726	+	aroE	b3281	0.84	-2.2
3,428,746	+	aroE	b3281	0.86	-4.0
3,428,746	+	aroE	b3281	0.86	-2.9
3,428,759	+	aroE	b3281	0.88	-2.8
3,428,759	+	aroE	b3281	0.88	-2.8
3,428,762	+	aroE	b3281	0.88	-2.9
3,428,767	-	aroE	b3281	0.89	-1.4
3,428,778	-	aroE	b3281	0.90	-2.6
3,428,778	-	aroE	b3281	0.90	-2.5
3,428,786	-				-3.0
3,428,786	-				-2.1
3,428,827	-				-1.4
3,428,827	-				-3.2
3,428,827	-				-2.1
3,428,827	-				-1.7
3,428,827	-				+0.1
3,428,855	-				-0.2
3,428,862	+				+0.4
3,428,862	+				-0.3
3,428,864	-				-0.4
3,428,864	-				-1.7
3,428,865	-				+0.4
3,429,403	+				+2.8
3,429,447	-				+0.1
3,429,489	+				-1.5
3,429,489	+				-0.4
3,429,489	+				-0.0
3,429,530	+	yrdD	b3283	0.16	+0.6
3,429,530	+	yrdD	b3283	0.16	-0.0
3,429,532	+	yrdD	b3283	0.17	-1.4
3,429,597	+	yrdD	b3283	0.29	-1.2
3,429,598	-	yrdD	b3283	0.29	-0.3
3,429,598	-	yrdD	b3283	0.29	-0.1
3,429,607	-	yrdD	b3283	0.30	-0.4
3,429,623	+	yrdD	b3283	0.33	+0.1
3,429,634	+	yrdD	b3283	0.35	-0.5
3,429,634	+	yrdD	b3283	0.35	-0.7
3,429,642	-	yrdD	b3283	0.37	-0.2
3,429,642	-	yrdD	b3283	0.37	-0.1
3,429,642	-	yrdD	b3283	0.37	+0.0
3,429,642	-	yrdD	b3283	0.37	+0.1
3,429,642	-	yrdD	b3283	0.37	-0.0
3,429,643	+	yrdD	b3283	0.37	+0.8
3,429,643	-	yrdD	b3283	0.37	+1.0
3,429,651	-	yrdD	b3283	0.38	+0.2
3,429,653	+	yrdD	b3283	0.39	+0.3
3,429,653	+	yrdD	b3283	0.39	-2.6
3,429,726	+	yrdD	b3283	0.52	+0.1
3,429,742	+	yrdD	b3283	0.55	-0.3
3,429,750	-	yrdD	b3283	0.57	+1.1
3,429,750	-	yrdD	b3283	0.57	-1.5
3,429,765	-	yrdD	b3283	0.59	-1.7
3,429,785	+	yrdD	b3283	0.63	-0.0
3,429,786	+	yrdD	b3283	0.63	+1.1
3,429,794	-	yrdD	b3283	0.65	+0.7
3,429,794	-	yrdD	b3283	0.65	+1.5
3,429,805	+	yrdD	b3283	0.67	-1.0