Strain Fitness in Escherichia coli BW25113 around b1286

Experiment: LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgmr and ymiB are separated by 53 nucleotidesymiB and rnb are separated by 77 nucleotidesrnb and yciW are separated by 67 nucleotides b1285: gmr - modulator of Rnase II stability (NCBI), at 1,342,781 to 1,344,766 gmr b4672: ymiB - expressed protein (RefSeq), at 1,344,820 to 1,344,924 ymiB b1286: rnb - exoribonuclease II (NCBI), at 1,345,002 to 1,346,936 rnb b1287: yciW - putative oxidoreductase (VIMSS), at 1,347,004 to 1,348,131 yciW Position (kb) 1345 1346 1347Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1344.018 kb on + strand, within gmrat 1344.084 kb on - strand, within gmrat 1344.111 kb on + strand, within gmrat 1344.215 kb on + strand, within gmrat 1344.256 kb on - strand, within gmrat 1344.290 kb on - strand, within gmrat 1344.481 kb on + strand, within gmrat 1345.121 kb on + strandat 1345.306 kb on - strand, within rnbat 1345.321 kb on - strand, within rnbat 1345.321 kb on - strand, within rnbat 1345.492 kb on - strand, within rnbat 1345.550 kb on - strand, within rnbat 1345.727 kb on + strand, within rnbat 1345.736 kb on - strand, within rnbat 1346.088 kb on + strand, within rnbat 1346.451 kb on - strand, within rnbat 1346.615 kb on + strand, within rnbat 1346.966 kb on + strandat 1347.070 kb on - strandat 1347.070 kb on - strandat 1347.370 kb on - strand, within yciWat 1347.512 kb on + strand, within yciWat 1347.594 kb on - strand, within yciWat 1347.924 kb on - strand, within yciW

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Per-strain Table

Position Strand Gene LocusTag Fraction LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
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1,344,018 + gmr b1285 0.62 -0.3
1,344,084 - gmr b1285 0.66 -1.9
1,344,111 + gmr b1285 0.67 -0.7
1,344,215 + gmr b1285 0.72 -1.1
1,344,256 - gmr b1285 0.74 -2.7
1,344,290 - gmr b1285 0.76 -1.4
1,344,481 + gmr b1285 0.86 -1.2
1,345,121 + +2.3
1,345,306 - rnb b1286 0.16 +2.0
1,345,321 - rnb b1286 0.16 +1.9
1,345,321 - rnb b1286 0.16 +0.5
1,345,492 - rnb b1286 0.25 +3.6
1,345,550 - rnb b1286 0.28 +0.2
1,345,727 + rnb b1286 0.37 +1.6
1,345,736 - rnb b1286 0.38 +1.8
1,346,088 + rnb b1286 0.56 +0.6
1,346,451 - rnb b1286 0.75 +2.5
1,346,615 + rnb b1286 0.83 -0.8
1,346,966 + +0.2
1,347,070 - +0.8
1,347,070 - +0.1
1,347,370 - yciW b1287 0.32 -0.8
1,347,512 + yciW b1287 0.45 -0.6
1,347,594 - yciW b1287 0.52 +0.0
1,347,924 - yciW b1287 0.82 -1.4

Or see this region's nucleotide sequence