Strain Fitness in Escherichia coli BW25113 around b1128

Experiment: LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
1,185,409	+	pepT	b1127	0.28	+0.4
1,185,639	+	pepT	b1127	0.47	+0.2
1,185,647	+	pepT	b1127	0.47	+0.9
1,185,720	+	pepT	b1127	0.53	+0.5
1,185,746	-	pepT	b1127	0.55	+0.2
1,185,779	-	pepT	b1127	0.58	+1.1
1,185,886	+	pepT	b1127	0.67	+0.5
1,185,986	-	pepT	b1127	0.75	+1.6
1,186,009	+	pepT	b1127	0.77	-0.2
1,186,182	-				+0.4
1,186,468	-	ycfD	b1128	0.11	+1.3
1,186,507	-	ycfD	b1128	0.15	+0.3
1,186,533	-	ycfD	b1128	0.17	+1.2
1,186,778	+	ycfD	b1128	0.39	+1.1
1,186,778	+	ycfD	b1128	0.39	+0.3
1,186,805	-	ycfD	b1128	0.41	+0.9
1,186,876	-	ycfD	b1128	0.48	+1.6
1,186,942	-	ycfD	b1128	0.53	+1.0
1,186,950	+	ycfD	b1128	0.54	+0.9
1,186,950	+	ycfD	b1128	0.54	+0.9
1,187,202	+	ycfD	b1128	0.77	+1.4
1,187,292	+	ycfD	b1128	0.85	+0.4
1,187,292	+	ycfD	b1128	0.85	+0.3
1,187,349	+	ycfD	b1128	0.90	-0.7
1,187,349	+	ycfD	b1128	0.90	+1.1
1,187,446	+				+0.6
1,187,521	+				-0.2
1,187,672	-				-1.4
1,187,672	-				-0.1
1,187,674	-				-0.9
1,187,674	-				-1.4
1,187,685	+	phoQ	b1129	0.10	+1.4
1,187,775	-	phoQ	b1129	0.16	-1.6
1,187,776	-	phoQ	b1129	0.16	-1.6
1,187,776	-	phoQ	b1129	0.16	-0.1
1,187,779	+	phoQ	b1129	0.16	-0.9
1,187,844	-	phoQ	b1129	0.21	-0.9
1,187,955	+	phoQ	b1129	0.28	-1.1
1,187,973	-	phoQ	b1129	0.30	-1.7
1,188,100	-	phoQ	b1129	0.38	+1.4
1,188,191	+	phoQ	b1129	0.45	+1.4
1,188,246	+	phoQ	b1129	0.48	+1.4
1,188,320	+	phoQ	b1129	0.53	-2.1
1,188,342	+	phoQ	b1129	0.55	+0.4
1,188,342	+	phoQ	b1129	0.55	-1.4
1,188,435	-	phoQ	b1129	0.61	+0.4
1,188,435	-	phoQ	b1129	0.61	-1.9
1,188,461	+	phoQ	b1129	0.63	-0.6