Experiment: LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glgA and glgC overlap by 1 nucleotides glgC and glgX are separated by 17 nucleotides
b3429: glgA - glycogen synthase (NCBI), at 3,564,623 to 3,566,056
glgA
b3430: glgC - glucose-1-phosphate adenylyltransferase (NCBI), at 3,566,056 to 3,567,351
glgC
b3431: glgX - glycogen debranching enzyme (NCBI), at 3,567,369 to 3,569,342
glgX
Position (kb)
3566
3567
3568 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3565.065 kb on - strand, within glgA at 3565.065 kb on - strand, within glgA at 3565.076 kb on + strand, within glgA at 3565.076 kb on + strand, within glgA at 3565.084 kb on - strand, within glgA at 3565.107 kb on - strand, within glgA at 3565.107 kb on - strand, within glgA at 3565.122 kb on + strand, within glgA at 3565.122 kb on + strand, within glgA at 3565.160 kb on + strand, within glgA at 3565.197 kb on - strand, within glgA at 3565.325 kb on - strand, within glgA at 3565.325 kb on - strand, within glgA at 3565.371 kb on + strand, within glgA at 3565.371 kb on + strand, within glgA at 3565.371 kb on + strand, within glgA at 3565.379 kb on - strand, within glgA at 3565.419 kb on + strand, within glgA at 3565.419 kb on + strand, within glgA at 3565.428 kb on + strand, within glgA at 3565.428 kb on + strand, within glgA at 3565.443 kb on + strand, within glgA at 3565.448 kb on + strand, within glgA at 3565.448 kb on + strand, within glgA at 3565.451 kb on - strand, within glgA at 3565.451 kb on - strand, within glgA at 3565.456 kb on - strand, within glgA at 3565.456 kb on - strand, within glgA at 3565.456 kb on - strand, within glgA at 3565.458 kb on + strand, within glgA at 3565.582 kb on - strand, within glgA at 3565.589 kb on - strand, within glgA at 3565.604 kb on + strand at 3565.658 kb on + strand, within glgA at 3565.671 kb on - strand, within glgA at 3565.671 kb on - strand, within glgA at 3565.689 kb on - strand, within glgA at 3565.689 kb on - strand, within glgA at 3565.723 kb on - strand, within glgA at 3565.751 kb on + strand, within glgA at 3565.767 kb on + strand, within glgA at 3565.785 kb on - strand, within glgA at 3565.888 kb on + strand, within glgA at 3566.108 kb on - strand at 3566.181 kb on - strand at 3566.186 kb on + strand, within glgC at 3566.205 kb on - strand, within glgC at 3566.239 kb on - strand, within glgC at 3566.275 kb on - strand, within glgC at 3566.275 kb on - strand, within glgC at 3566.377 kb on - strand, within glgC at 3566.397 kb on - strand, within glgC at 3566.399 kb on + strand, within glgC at 3566.452 kb on + strand, within glgC at 3566.477 kb on - strand, within glgC at 3566.515 kb on - strand, within glgC at 3566.536 kb on - strand, within glgC at 3566.541 kb on - strand, within glgC at 3566.593 kb on - strand, within glgC at 3566.598 kb on - strand, within glgC at 3566.660 kb on - strand, within glgC at 3566.660 kb on - strand, within glgC at 3566.676 kb on + strand, within glgC at 3566.676 kb on + strand, within glgC at 3566.689 kb on + strand, within glgC at 3566.689 kb on + strand, within glgC at 3566.711 kb on - strand, within glgC at 3566.711 kb on - strand, within glgC at 3566.718 kb on - strand, within glgC at 3566.719 kb on - strand, within glgC at 3566.750 kb on + strand, within glgC at 3566.841 kb on + strand, within glgC at 3566.841 kb on + strand, within glgC at 3566.849 kb on - strand, within glgC at 3566.849 kb on - strand, within glgC at 3566.902 kb on - strand, within glgC at 3566.902 kb on - strand, within glgC at 3566.923 kb on + strand, within glgC at 3567.039 kb on + strand, within glgC at 3567.091 kb on + strand, within glgC at 3567.108 kb on + strand, within glgC at 3567.108 kb on + strand, within glgC at 3567.116 kb on + strand, within glgC at 3567.124 kb on - strand, within glgC at 3567.126 kb on + strand, within glgC at 3567.126 kb on + strand, within glgC at 3567.130 kb on - strand, within glgC at 3567.135 kb on - strand, within glgC at 3567.135 kb on - strand, within glgC at 3567.170 kb on + strand, within glgC at 3567.178 kb on - strand, within glgC at 3567.214 kb on + strand, within glgC at 3567.216 kb on + strand, within glgC at 3567.249 kb on - strand at 3567.267 kb on - strand at 3567.318 kb on + strand at 3567.325 kb on + strand at 3567.325 kb on + strand at 3567.336 kb on + strand at 3567.344 kb on - strand at 3567.344 kb on - strand at 3567.372 kb on + strand at 3567.372 kb on + strand at 3567.391 kb on - strand at 3567.423 kb on - strand at 3567.435 kb on - strand at 3567.435 kb on - strand at 3567.637 kb on + strand, within glgX at 3567.658 kb on + strand, within glgX at 3567.658 kb on + strand, within glgX at 3567.709 kb on + strand, within glgX at 3567.709 kb on + strand, within glgX at 3567.712 kb on - strand, within glgX at 3567.734 kb on - strand, within glgX at 3567.738 kb on - strand, within glgX at 3567.743 kb on + strand, within glgX at 3567.748 kb on + strand, within glgX at 3567.779 kb on - strand, within glgX at 3567.809 kb on - strand, within glgX at 3567.809 kb on - strand, within glgX at 3567.892 kb on + strand, within glgX at 3567.902 kb on - strand, within glgX at 3567.902 kb on - strand, within glgX at 3568.004 kb on + strand, within glgX at 3568.120 kb on + strand, within glgX at 3568.120 kb on + strand, within glgX at 3568.199 kb on + strand, within glgX at 3568.214 kb on - strand, within glgX at 3568.224 kb on - strand, within glgX at 3568.229 kb on + strand, within glgX at 3568.229 kb on + strand, within glgX at 3568.230 kb on - strand, within glgX at 3568.230 kb on - strand, within glgX at 3568.237 kb on - strand, within glgX at 3568.266 kb on + strand, within glgX at 3568.266 kb on + strand, within glgX at 3568.274 kb on - strand, within glgX at 3568.274 kb on - strand, within glgX at 3568.274 kb on - strand, within glgX at 3568.274 kb on - strand, within glgX at 3568.274 kb on - strand, within glgX at 3568.274 kb on - strand, within glgX at 3568.284 kb on - strand, within glgX at 3568.317 kb on + strand, within glgX at 3568.317 kb on + strand, within glgX at 3568.325 kb on - strand, within glgX at 3568.325 kb on - strand, within glgX at 3568.325 kb on - strand, within glgX
Per-strain Table
Position Strand Gene LocusTag Fraction LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) remove 3,565,065 - glgA b3429 0.31 -3.5 3,565,065 - glgA b3429 0.31 -1.1 3,565,076 + glgA b3429 0.32 -1.3 3,565,076 + glgA b3429 0.32 -0.5 3,565,084 - glgA b3429 0.32 -3.3 3,565,107 - glgA b3429 0.34 -3.1 3,565,107 - glgA b3429 0.34 -2.6 3,565,122 + glgA b3429 0.35 -1.8 3,565,122 + glgA b3429 0.35 +0.5 3,565,160 + glgA b3429 0.37 -0.3 3,565,197 - glgA b3429 0.40 -1.9 3,565,325 - glgA b3429 0.49 -1.0 3,565,325 - glgA b3429 0.49 -2.2 3,565,371 + glgA b3429 0.52 -0.1 3,565,371 + glgA b3429 0.52 -1.7 3,565,371 + glgA b3429 0.52 -1.7 3,565,379 - glgA b3429 0.53 -1.8 3,565,419 + glgA b3429 0.56 -3.2 3,565,419 + glgA b3429 0.56 -2.8 3,565,428 + glgA b3429 0.56 -0.5 3,565,428 + glgA b3429 0.56 +2.3 3,565,443 + glgA b3429 0.57 -1.1 3,565,448 + glgA b3429 0.58 -3.9 3,565,448 + glgA b3429 0.58 -1.1 3,565,451 - glgA b3429 0.58 -1.3 3,565,451 - glgA b3429 0.58 -1.7 3,565,456 - glgA b3429 0.58 -3.2 3,565,456 - glgA b3429 0.58 -1.1 3,565,456 - glgA b3429 0.58 -2.6 3,565,458 + glgA b3429 0.58 -1.5 3,565,582 - glgA b3429 0.67 -1.8 3,565,589 - glgA b3429 0.67 -0.9 3,565,604 + -0.2 3,565,658 + glgA b3429 0.72 -0.9 3,565,671 - glgA b3429 0.73 -2.4 3,565,671 - glgA b3429 0.73 -1.5 3,565,689 - glgA b3429 0.74 -4.2 3,565,689 - glgA b3429 0.74 -1.2 3,565,723 - glgA b3429 0.77 -1.9 3,565,751 + glgA b3429 0.79 -0.6 3,565,767 + glgA b3429 0.80 -4.1 3,565,785 - glgA b3429 0.81 -2.1 3,565,888 + glgA b3429 0.88 -0.1 3,566,108 - +0.5 3,566,181 - +1.3 3,566,186 + glgC b3430 0.10 -1.7 3,566,205 - glgC b3430 0.11 +1.3 3,566,239 - glgC b3430 0.14 -0.2 3,566,275 - glgC b3430 0.17 +0.8 3,566,275 - glgC b3430 0.17 +0.5 3,566,377 - glgC b3430 0.25 +0.2 3,566,397 - glgC b3430 0.26 +0.3 3,566,399 + glgC b3430 0.26 +0.8 3,566,452 + glgC b3430 0.31 -0.1 3,566,477 - glgC b3430 0.32 -0.1 3,566,515 - glgC b3430 0.35 -0.4 3,566,536 - glgC b3430 0.37 +0.1 3,566,541 - glgC b3430 0.37 -0.2 3,566,593 - glgC b3430 0.41 -0.3 3,566,598 - glgC b3430 0.42 +0.4 3,566,660 - glgC b3430 0.47 +0.8 3,566,660 - glgC b3430 0.47 +0.3 3,566,676 + glgC b3430 0.48 +1.8 3,566,676 + glgC b3430 0.48 +0.1 3,566,689 + glgC b3430 0.49 -0.5 3,566,689 + glgC b3430 0.49 +0.3 3,566,711 - glgC b3430 0.51 +0.4 3,566,711 - glgC b3430 0.51 +1.8 3,566,718 - glgC b3430 0.51 +0.3 3,566,719 - glgC b3430 0.51 +0.7 3,566,750 + glgC b3430 0.54 +0.8 3,566,841 + glgC b3430 0.61 -0.1 3,566,841 + glgC b3430 0.61 +0.9 3,566,849 - glgC b3430 0.61 +0.7 3,566,849 - glgC b3430 0.61 +1.1 3,566,902 - glgC b3430 0.65 -3.0 3,566,902 - glgC b3430 0.65 -1.1 3,566,923 + glgC b3430 0.67 -0.4 3,567,039 + glgC b3430 0.76 +0.4 3,567,091 + glgC b3430 0.80 +0.3 3,567,108 + glgC b3430 0.81 +0.2 3,567,108 + glgC b3430 0.81 +1.7 3,567,116 + glgC b3430 0.82 +0.8 3,567,124 - glgC b3430 0.82 +0.7 3,567,126 + glgC b3430 0.83 +0.8 3,567,126 + glgC b3430 0.83 +0.8 3,567,130 - glgC b3430 0.83 +0.8 3,567,135 - glgC b3430 0.83 +0.1 3,567,135 - glgC b3430 0.83 +1.3 3,567,170 + glgC b3430 0.86 -1.2 3,567,178 - glgC b3430 0.87 +0.8 3,567,214 + glgC b3430 0.89 +0.1 3,567,216 + glgC b3430 0.90 +0.4 3,567,249 - +0.8 3,567,267 - +0.7 3,567,318 + +0.1 3,567,325 + -0.8 3,567,325 + -1.6 3,567,336 + +0.2 3,567,344 - +0.2 3,567,344 - -0.2 3,567,372 + -1.9 3,567,372 + -0.4 3,567,391 - -1.4 3,567,423 - +0.5 3,567,435 - -0.3 3,567,435 - -0.7 3,567,637 + glgX b3431 0.14 +0.6 3,567,658 + glgX b3431 0.15 -0.0 3,567,658 + glgX b3431 0.15 -0.6 3,567,709 + glgX b3431 0.17 -1.4 3,567,709 + glgX b3431 0.17 -1.5 3,567,712 - glgX b3431 0.17 +0.4 3,567,734 - glgX b3431 0.18 +0.0 3,567,738 - glgX b3431 0.19 -1.6 3,567,743 + glgX b3431 0.19 +0.6 3,567,748 + glgX b3431 0.19 +0.1 3,567,779 - glgX b3431 0.21 +0.2 3,567,809 - glgX b3431 0.22 +1.2 3,567,809 - glgX b3431 0.22 +0.5 3,567,892 + glgX b3431 0.26 -0.7 3,567,902 - glgX b3431 0.27 +0.2 3,567,902 - glgX b3431 0.27 -0.9 3,568,004 + glgX b3431 0.32 +1.0 3,568,120 + glgX b3431 0.38 -0.1 3,568,120 + glgX b3431 0.38 -3.2 3,568,199 + glgX b3431 0.42 +2.1 3,568,214 - glgX b3431 0.43 +0.6 3,568,224 - glgX b3431 0.43 +0.1 3,568,229 + glgX b3431 0.44 -1.8 3,568,229 + glgX b3431 0.44 -0.4 3,568,230 - glgX b3431 0.44 +0.1 3,568,230 - glgX b3431 0.44 -0.1 3,568,237 - glgX b3431 0.44 -0.8 3,568,266 + glgX b3431 0.45 +0.3 3,568,266 + glgX b3431 0.45 -2.0 3,568,274 - glgX b3431 0.46 -0.7 3,568,274 - glgX b3431 0.46 +0.7 3,568,274 - glgX b3431 0.46 +1.5 3,568,274 - glgX b3431 0.46 -3.1 3,568,274 - glgX b3431 0.46 -0.6 3,568,274 - glgX b3431 0.46 -1.1 3,568,284 - glgX b3431 0.46 +0.5 3,568,317 + glgX b3431 0.48 -2.4 3,568,317 + glgX b3431 0.48 +0.3 3,568,325 - glgX b3431 0.48 -0.3 3,568,325 - glgX b3431 0.48 -0.0 3,568,325 - glgX b3431 0.48 +0.1
Or see this region's nucleotide sequence