Strain Fitness in Escherichia coli BW25113 around b3434

Experiment: LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasd and yhgN are separated by 192 nucleotidesyhgN and gntU are separated by 56 nucleotides b3433: asd - aspartate-semialdehyde dehydrogenase (NCBI), at 3,571,798 to 3,572,901 asd b3434: yhgN - predicted antibiotic transporter (NCBI), at 3,573,094 to 3,573,687 yhgN b4476: gntU - gluconate transporter, low affinity GNT 1 system (NCBI), at 3,573,744 to 3,575,084 gntU Position (kb) 3573 3574Strain fitness (log2 ratio) -2 -1 0 1at 3572.953 kb on - strandat 3572.953 kb on - strandat 3572.958 kb on - strandat 3572.961 kb on + strandat 3572.970 kb on - strandat 3573.020 kb on + strandat 3573.030 kb on - strandat 3573.033 kb on - strandat 3573.033 kb on - strandat 3573.034 kb on + strandat 3573.038 kb on + strandat 3573.056 kb on + strandat 3573.159 kb on - strand, within yhgNat 3573.159 kb on - strand, within yhgNat 3573.180 kb on - strand, within yhgNat 3573.212 kb on - strand, within yhgNat 3573.237 kb on + strand, within yhgNat 3573.237 kb on + strand, within yhgNat 3573.260 kb on - strand, within yhgNat 3573.305 kb on - strand, within yhgNat 3573.305 kb on - strand, within yhgNat 3573.313 kb on + strand, within yhgNat 3573.323 kb on + strand, within yhgNat 3573.373 kb on + strand, within yhgNat 3573.418 kb on - strand, within yhgNat 3573.468 kb on + strand, within yhgNat 3573.468 kb on + strand, within yhgNat 3573.469 kb on - strand, within yhgNat 3573.471 kb on + strand, within yhgNat 3573.488 kb on - strand, within yhgNat 3573.528 kb on - strand, within yhgNat 3573.569 kb on + strand, within yhgNat 3573.569 kb on + strand, within yhgNat 3573.582 kb on + strand, within yhgNat 3573.595 kb on - strand, within yhgNat 3573.595 kb on - strand, within yhgNat 3573.643 kb on + strandat 3573.643 kb on + strandat 3573.652 kb on + strandat 3573.683 kb on + strandat 3573.708 kb on + strandat 3573.710 kb on + strandat 3573.758 kb on - strandat 3573.782 kb on + strandat 3573.810 kb on - strandat 3573.848 kb on - strandat 3573.848 kb on - strandat 3573.957 kb on - strand, within gntUat 3573.967 kb on - strand, within gntUat 3574.017 kb on + strand, within gntUat 3574.017 kb on + strand, within gntUat 3574.017 kb on + strand, within gntUat 3574.019 kb on + strand, within gntUat 3574.019 kb on + strand, within gntUat 3574.042 kb on - strand, within gntUat 3574.107 kb on + strand, within gntUat 3574.108 kb on - strand, within gntUat 3574.133 kb on - strand, within gntUat 3574.154 kb on - strand, within gntUat 3574.154 kb on - strand, within gntUat 3574.187 kb on + strand, within gntUat 3574.274 kb on + strand, within gntUat 3574.282 kb on + strand, within gntUat 3574.284 kb on + strand, within gntUat 3574.326 kb on - strand, within gntUat 3574.356 kb on + strand, within gntUat 3574.376 kb on + strand, within gntUat 3574.428 kb on + strand, within gntUat 3574.428 kb on + strand, within gntUat 3574.449 kb on - strand, within gntUat 3574.466 kb on + strand, within gntUat 3574.466 kb on + strand, within gntUat 3574.487 kb on + strand, within gntUat 3574.487 kb on + strand, within gntUat 3574.490 kb on - strand, within gntUat 3574.490 kb on - strand, within gntUat 3574.502 kb on - strand, within gntUat 3574.502 kb on - strand, within gntUat 3574.528 kb on + strand, within gntUat 3574.528 kb on + strand, within gntUat 3574.547 kb on + strand, within gntUat 3574.595 kb on + strand, within gntUat 3574.598 kb on - strand, within gntU

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Per-strain Table

Position Strand Gene LocusTag Fraction LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
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3,572,953 - -0.3
3,572,953 - -0.3
3,572,958 - -0.6
3,572,961 + -1.2
3,572,970 - -0.7
3,573,020 + +0.7
3,573,030 - -0.1
3,573,033 - +0.0
3,573,033 - +0.4
3,573,034 + +0.6
3,573,038 + -0.2
3,573,056 + +0.0
3,573,159 - yhgN b3434 0.11 -0.3
3,573,159 - yhgN b3434 0.11 -0.3
3,573,180 - yhgN b3434 0.14 -1.7
3,573,212 - yhgN b3434 0.20 -0.6
3,573,237 + yhgN b3434 0.24 +0.8
3,573,237 + yhgN b3434 0.24 +0.4
3,573,260 - yhgN b3434 0.28 -0.3
3,573,305 - yhgN b3434 0.36 +1.4
3,573,305 - yhgN b3434 0.36 +0.6
3,573,313 + yhgN b3434 0.37 +0.4
3,573,323 + yhgN b3434 0.39 -0.8
3,573,373 + yhgN b3434 0.47 +0.2
3,573,418 - yhgN b3434 0.55 -0.2
3,573,468 + yhgN b3434 0.63 +0.0
3,573,468 + yhgN b3434 0.63 -0.3
3,573,469 - yhgN b3434 0.63 +0.5
3,573,471 + yhgN b3434 0.63 -0.2
3,573,488 - yhgN b3434 0.66 +0.2
3,573,528 - yhgN b3434 0.73 -0.7
3,573,569 + yhgN b3434 0.80 -0.3
3,573,569 + yhgN b3434 0.80 -0.7
3,573,582 + yhgN b3434 0.82 -0.2
3,573,595 - yhgN b3434 0.84 -0.5
3,573,595 - yhgN b3434 0.84 -0.8
3,573,643 + -0.6
3,573,643 + +0.0
3,573,652 + +1.3
3,573,683 + -1.0
3,573,708 + +0.2
3,573,710 + +0.4
3,573,758 - -0.1
3,573,782 + -1.0
3,573,810 - +0.5
3,573,848 - -0.5
3,573,848 - +0.3
3,573,957 - gntU b4476 0.16 -0.9
3,573,967 - gntU b4476 0.17 -0.9
3,574,017 + gntU b4476 0.20 -0.3
3,574,017 + gntU b4476 0.20 +0.1
3,574,017 + gntU b4476 0.20 +0.8
3,574,019 + gntU b4476 0.21 +0.1
3,574,019 + gntU b4476 0.21 -0.8
3,574,042 - gntU b4476 0.22 -0.1
3,574,107 + gntU b4476 0.27 -2.2
3,574,108 - gntU b4476 0.27 -0.3
3,574,133 - gntU b4476 0.29 +0.5
3,574,154 - gntU b4476 0.31 +0.3
3,574,154 - gntU b4476 0.31 +1.6
3,574,187 + gntU b4476 0.33 -0.2
3,574,274 + gntU b4476 0.40 -0.2
3,574,282 + gntU b4476 0.40 -0.1
3,574,284 + gntU b4476 0.40 +0.2
3,574,326 - gntU b4476 0.43 -0.3
3,574,356 + gntU b4476 0.46 -0.0
3,574,376 + gntU b4476 0.47 +0.1
3,574,428 + gntU b4476 0.51 -0.3
3,574,428 + gntU b4476 0.51 -1.5
3,574,449 - gntU b4476 0.53 +0.1
3,574,466 + gntU b4476 0.54 -0.0
3,574,466 + gntU b4476 0.54 -0.6
3,574,487 + gntU b4476 0.55 +1.3
3,574,487 + gntU b4476 0.55 -0.4
3,574,490 - gntU b4476 0.56 +0.4
3,574,490 - gntU b4476 0.56 +0.1
3,574,502 - gntU b4476 0.57 +0.1
3,574,502 - gntU b4476 0.57 -0.7
3,574,528 + gntU b4476 0.58 +0.7
3,574,528 + gntU b4476 0.58 +0.1
3,574,547 + gntU b4476 0.60 +0.3
3,574,595 + gntU b4476 0.63 +0.3
3,574,598 - gntU b4476 0.64 -0.1

Or see this region's nucleotide sequence