Strain Fitness in Escherichia coli BW25113 around b3059

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 mM (C)
3,201,765	-	bacA	b3057	0.53	+0.0
3,201,880	+	bacA	b3057	0.67	+0.9
3,201,970	-	bacA	b3057	0.78	+0.1
3,201,978	-	bacA	b3057	0.79	+0.2
3,201,995	-	bacA	b3057	0.81	-0.2
3,202,065	-	bacA	b3057	0.89	-3.1
3,202,069	-	bacA	b3057	0.90	+0.4
3,202,069	-	bacA	b3057	0.90	+0.8
3,202,081	-				-0.5
3,202,081	-				+0.2
3,202,136	+				-1.0
3,202,136	+				+0.2
3,202,139	+				-0.8
3,202,187	+				-0.2
3,202,219	-				-0.7
3,202,602	-				-3.3
3,202,644	-				+0.4
3,202,712	+				+0.4
3,202,878	+	ygiH	b3059	0.26	+0.9
3,202,878	+	ygiH	b3059	0.26	-0.6
3,202,968	-	ygiH	b3059	0.41	-1.5
3,203,057	+	ygiH	b3059	0.55	-0.4
3,203,072	-	ygiH	b3059	0.58	+0.5
3,203,128	-	ygiH	b3059	0.67	+0.3
3,203,143	+	ygiH	b3059	0.69	-0.5
3,203,235	-	ygiH	b3059	0.84	+0.5
3,203,306	-				-0.2
3,203,353	+				-0.3
3,203,356	-				+0.1
3,203,361	-				-0.3
3,203,368	-				-0.1
3,203,387	+				-1.3
3,203,387	+				+0.1
3,203,469	-	ygiP	b3060	0.13	-1.1
3,203,469	-	ygiP	b3060	0.13	+0.8
3,203,469	-	ygiP	b3060	0.13	-0.9
3,203,507	+	ygiP	b3060	0.17	+0.9
3,203,525	-	ygiP	b3060	0.19	+0.1
3,203,531	+	ygiP	b3060	0.20	+0.1
3,203,560	-	ygiP	b3060	0.23	-0.0
3,203,560	-	ygiP	b3060	0.23	-0.3
3,203,580	+	ygiP	b3060	0.25	-1.0
3,203,609	+	ygiP	b3060	0.28	-0.3
3,203,609	-	ygiP	b3060	0.28	-0.6
3,203,609	-	ygiP	b3060	0.28	-0.4
3,203,617	+	ygiP	b3060	0.29	+0.4
3,203,617	-	ygiP	b3060	0.29	-1.5
3,203,617	-	ygiP	b3060	0.29	+1.3
3,203,618	+	ygiP	b3060	0.29	-0.9
3,203,618	+	ygiP	b3060	0.29	-0.6
3,203,626	-	ygiP	b3060	0.30	+0.7
3,203,642	+	ygiP	b3060	0.32	+0.3
3,203,642	+	ygiP	b3060	0.32	+0.5
3,203,650	+	ygiP	b3060	0.33	+0.7
3,203,650	+	ygiP	b3060	0.33	+0.3
3,203,666	+	ygiP	b3060	0.34	+0.5
3,203,666	+	ygiP	b3060	0.34	+0.3
3,203,673	+	ygiP	b3060	0.35	-0.6
3,203,674	+	ygiP	b3060	0.35	+0.4
3,203,674	+	ygiP	b3060	0.35	+0.1
3,203,674	-	ygiP	b3060	0.35	+0.3
3,203,674	-	ygiP	b3060	0.35	-0.5
3,203,674	-	ygiP	b3060	0.35	+0.3
3,203,677	+	ygiP	b3060	0.35	+0.6
3,203,682	-	ygiP	b3060	0.36	+0.5
3,203,685	+	ygiP	b3060	0.36	+0.2
3,203,685	+	ygiP	b3060	0.36	-0.3
3,203,685	+	ygiP	b3060	0.36	-0.7
3,203,685	+	ygiP	b3060	0.36	-1.2
3,203,689	+	ygiP	b3060	0.37	+0.2
3,203,689	+	ygiP	b3060	0.37	+0.1
3,203,695	+	ygiP	b3060	0.37	-0.1
3,203,695	-	ygiP	b3060	0.37	+0.7
3,203,696	+	ygiP	b3060	0.38	-0.3
3,203,698	+	ygiP	b3060	0.38	+0.2
3,203,698	+	ygiP	b3060	0.38	-0.2
3,203,712	+	ygiP	b3060	0.39	-0.6
3,203,720	+	ygiP	b3060	0.40	-0.1
3,203,720	+	ygiP	b3060	0.40	-0.0
3,203,720	+	ygiP	b3060	0.40	+0.0
3,203,721	+	ygiP	b3060	0.40	+0.7
3,203,728	-	ygiP	b3060	0.41	+0.5
3,203,728	-	ygiP	b3060	0.41	+2.1
3,203,755	+	ygiP	b3060	0.44	+0.4
3,203,757	+	ygiP	b3060	0.44	+1.0
3,203,757	+	ygiP	b3060	0.44	+0.3
3,203,861	-	ygiP	b3060	0.55	-0.7
3,203,861	-	ygiP	b3060	0.55	+0.3
3,203,907	-	ygiP	b3060	0.60	-0.3
3,203,907	-	ygiP	b3060	0.60	-1.4
3,203,908	-	ygiP	b3060	0.60	+0.7
3,203,908	-	ygiP	b3060	0.60	-0.6
3,203,919	-	ygiP	b3060	0.61	-1.8
3,203,919	-	ygiP	b3060	0.61	-0.4
3,203,927	+	ygiP	b3060	0.62	+2.5
3,203,932	-	ygiP	b3060	0.63	-2.1
3,203,932	-	ygiP	b3060	0.63	+1.1
3,203,933	-	ygiP	b3060	0.63	-0.3
3,203,933	-	ygiP	b3060	0.63	-1.4
3,203,935	-	ygiP	b3060	0.63	-0.3
3,203,935	-	ygiP	b3060	0.63	-0.1
3,203,940	-	ygiP	b3060	0.64	+0.3
3,203,940	-	ygiP	b3060	0.64	+0.5
3,203,940	-	ygiP	b3060	0.64	+0.6
3,203,940	-	ygiP	b3060	0.64	-0.6
3,203,947	+	ygiP	b3060	0.64	+1.1
3,203,947	+	ygiP	b3060	0.64	+2.1
3,203,947	+	ygiP	b3060	0.64	+1.1
3,203,947	+	ygiP	b3060	0.64	-1.9
3,203,953	-	ygiP	b3060	0.65	-0.1
3,203,953	-	ygiP	b3060	0.65	+0.3
3,203,953	-	ygiP	b3060	0.65	-0.4
3,203,953	-	ygiP	b3060	0.65	-0.4
3,203,953	-	ygiP	b3060	0.65	-0.4
3,203,953	-	ygiP	b3060	0.65	-0.9
3,203,953	-	ygiP	b3060	0.65	+0.6
3,203,953	-	ygiP	b3060	0.65	+0.0
3,203,955	-	ygiP	b3060	0.65	+1.1
3,203,986	-	ygiP	b3060	0.69	-0.7
3,203,986	-	ygiP	b3060	0.69	-0.2
3,203,987	-	ygiP	b3060	0.69	-2.0
3,203,987	-	ygiP	b3060	0.69	-0.1
3,203,987	-	ygiP	b3060	0.69	-0.9
3,204,012	-	ygiP	b3060	0.71	-0.4
3,204,012	-	ygiP	b3060	0.71	+0.2
3,204,021	-	ygiP	b3060	0.72	+0.1
3,204,021	-	ygiP	b3060	0.72	-0.1
3,204,021	-	ygiP	b3060	0.72	+0.2
3,204,022	-	ygiP	b3060	0.72	+0.5
3,204,022	-	ygiP	b3060	0.72	-0.9
3,204,023	-	ygiP	b3060	0.73	-0.0
3,204,029	-	ygiP	b3060	0.73	+0.1
3,204,034	-	ygiP	b3060	0.74	-0.7
3,204,046	-	ygiP	b3060	0.75	+0.1
3,204,085	+	ygiP	b3060	0.79	-0.1
3,204,093	-	ygiP	b3060	0.80	-0.0
3,204,117	+	ygiP	b3060	0.83	+0.7
3,204,173	+	ygiP	b3060	0.89	+0.6
3,204,202	-				-0.7
3,204,202	-				-0.5
3,204,257	+				-0.6
3,204,263	-				-0.8
3,204,270	-				-0.7
3,204,275	-				+0.3
3,204,278	-				-0.5
3,204,294	+				+0.1
3,204,294	+				+1.8
3,204,294	+				-0.4
3,204,302	-				+0.4
3,204,302	-				+0.1
3,204,316	+				+0.5
3,204,319	-				-0.5