Strain Fitness in Escherichia coli BW25113 around b3601

Experiment: Uridine 0.4095 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine 0.4095 mM (C)
3,772,614	+	mtlD	b3600	0.15	-0.8
3,772,622	-	mtlD	b3600	0.15	-0.7
3,772,679	-	mtlD	b3600	0.20	-0.9
3,772,679	-	mtlD	b3600	0.20	+0.2
3,772,714	+	mtlD	b3600	0.23	+0.3
3,772,725	-	mtlD	b3600	0.24	-1.4
3,772,725	-	mtlD	b3600	0.24	-2.4
3,772,725	-	mtlD	b3600	0.24	-0.8
3,772,774	+	mtlD	b3600	0.28	-0.3
3,772,774	+	mtlD	b3600	0.28	-0.2
3,772,782	-	mtlD	b3600	0.29	-0.3
3,772,821	+	mtlD	b3600	0.33	-0.3
3,772,823	+	mtlD	b3600	0.33	-1.7
3,772,823	+	mtlD	b3600	0.33	+0.3
3,772,823	+	mtlD	b3600	0.33	+0.0
3,772,833	+	mtlD	b3600	0.34	-0.1
3,772,833	+	mtlD	b3600	0.34	+0.7
3,772,921	-	mtlD	b3600	0.41	-0.8
3,772,935	-	mtlD	b3600	0.42	-1.4
3,772,988	+	mtlD	b3600	0.47	+0.1
3,772,988	+	mtlD	b3600	0.47	+0.4
3,773,018	-	mtlD	b3600	0.50	-0.1
3,773,032	+	mtlD	b3600	0.51	-0.3
3,773,041	-	mtlD	b3600	0.52	-1.3
3,773,051	-	mtlD	b3600	0.53	-1.4
3,773,083	+	mtlD	b3600	0.55	-0.0
3,773,114	-	mtlD	b3600	0.58	+0.5
3,773,114	-	mtlD	b3600	0.58	-0.4
3,773,114	-	mtlD	b3600	0.58	+0.9
3,773,122	-	mtlD	b3600	0.59	+0.4
3,773,150	+	mtlD	b3600	0.61	-0.1
3,773,185	+	mtlD	b3600	0.64	+0.0
3,773,185	+	mtlD	b3600	0.64	+1.3
3,773,211	-				+0.2
3,773,211	-	mtlD	b3600	0.66	-0.8
3,773,218	+	mtlD	b3600	0.67	-0.0
3,773,226	-	mtlD	b3600	0.68	-1.3
3,773,246	-	mtlD	b3600	0.70	-0.1
3,773,246	-	mtlD	b3600	0.70	-0.6
3,773,267	-	mtlD	b3600	0.71	-0.1
3,773,267	-	mtlD	b3600	0.71	-0.2
3,773,338	-	mtlD	b3600	0.78	-0.6
3,773,351	+	mtlD	b3600	0.79	+0.1
3,773,375	-	mtlD	b3600	0.81	+1.3
3,773,427	-	mtlD	b3600	0.85	+2.2
3,773,427	-	mtlD	b3600	0.85	-0.8
3,773,448	+	mtlD	b3600	0.87	-0.2
3,773,469	+	mtlD	b3600	0.89	+0.3
3,773,477	-	mtlD	b3600	0.90	-1.0
3,773,511	-				+0.1
3,773,562	-				-0.4
3,773,565	+				-0.3
3,773,568	+				-0.2
3,773,607	+				-0.7
3,773,609	+				-0.3
3,773,615	-				-0.3
3,773,627	+				+0.5
3,773,688	+	mtlR	b3601	0.16	-1.2
3,773,688	+	mtlR	b3601	0.16	-0.8
3,773,697	+	mtlR	b3601	0.17	-0.4
3,773,718	-	mtlR	b3601	0.21	-1.8
3,773,718	-	mtlR	b3601	0.21	+0.1
3,773,810	+	mtlR	b3601	0.37	+0.5
3,773,816	-	mtlR	b3601	0.38	-0.4
3,773,818	+	mtlR	b3601	0.38	-2.5
3,773,828	-	mtlR	b3601	0.40	+0.8
3,773,828	-	mtlR	b3601	0.40	-0.3
3,773,829	+	mtlR	b3601	0.40	-0.8
3,773,857	+	mtlR	b3601	0.45	-1.1
3,773,857	+	mtlR	b3601	0.45	-0.4
3,773,928	-	mtlR	b3601	0.57	-1.0
3,773,928	-	mtlR	b3601	0.57	-0.8
3,774,003	-	mtlR	b3601	0.69	-2.0
3,774,003	-	mtlR	b3601	0.69	-0.7
3,774,007	+	mtlR	b3601	0.70	+0.3
3,774,007	+	mtlR	b3601	0.70	+0.9
3,774,012	+	mtlR	b3601	0.71	-0.8
3,774,028	-	mtlR	b3601	0.74	+0.8
3,774,028	-	mtlR	b3601	0.74	-1.0
3,774,113	-	mtlR	b3601	0.88	-3.1
3,774,123	+	mtlR	b3601	0.90	-1.2
3,774,192	+				-0.3
3,774,192	+				+0.4
3,774,197	+				-0.2
3,774,197	+				-2.0
3,774,201	+				+0.2
3,774,201	+				+0.8
3,774,201	+				-0.3
3,774,201	+				+0.2
3,774,233	+	yibT	b4554	0.19	-0.9
3,774,233	+	yibT	b4554	0.19	+0.1
3,774,255	-	yibT	b4554	0.29	-0.4
3,774,258	-	yibT	b4554	0.30	-0.4
3,774,258	-	yibT	b4554	0.30	+0.2
3,774,287	-	yibT	b4554	0.44	-0.3
3,774,292	-	yibT	b4554	0.47	+0.1
3,774,331	-	yibT	b4554	0.65	-0.5
3,774,331	-	yibT	b4554	0.65	+0.4
3,774,331	-	yibT	b4554	0.65	+0.2
3,774,331	-	yibT	b4554	0.65	+0.5
3,774,419	-				+0.1
3,774,424	-				-0.0
3,774,476	-				-0.3
3,774,490	-				-0.2
3,774,604	-				-0.1
3,774,622	-				+0.5
3,774,629	+				+0.4
3,774,629	+				-0.1
3,774,651	-				-0.0
3,774,651	-				-0.3
3,774,656	-				+0.1
3,774,656	-				-0.5
3,774,657	-				-0.4
3,774,732	+	yibL	b3602	0.12	-0.2
3,774,738	-	yibL	b3602	0.14	+0.5
3,774,738	-	yibL	b3602	0.14	-1.0
3,774,781	+	yibL	b3602	0.26	+1.4
3,774,858	-	yibL	b3602	0.47	-0.6
3,774,867	+	yibL	b3602	0.49	+0.4
3,774,898	+	yibL	b3602	0.58	+0.1
3,774,898	+	yibL	b3602	0.58	-0.3
3,774,938	-	yibL	b3602	0.69	-0.2
3,774,938	-	yibL	b3602	0.69	-1.0
3,774,944	+	yibL	b3602	0.71	+0.4
3,774,944	+	yibL	b3602	0.71	+0.4
3,774,973	+	yibL	b3602	0.79	+0.6
3,774,994	-	yibL	b3602	0.84	-1.4
3,775,062	+				+0.6
3,775,062	+				+0.4
3,775,125	-				-0.5
3,775,125	-				+0.2
3,775,130	-				-0.8
3,775,130	-				-1.3
3,775,156	+				-0.7
3,775,156	+				+0.4