Strain Fitness in Escherichia coli BW25113 around b0777

Experiment: Uridine 0.4095 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbioF and bioC overlap by 14 nucleotidesbioC and bioD overlap by 8 nucleotides b0776: bioF - 8-amino-7-oxononanoate synthase (NCBI), at 809,604 to 810,758 bioF b0777: bioC - predicted methltransferase, enzyme of biotin synthesis (NCBI), at 810,745 to 811,500 bioC b0778: bioD - dethiobiotin synthetase (NCBI), at 811,493 to 812,170 bioD Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1at 809.993 kb on + strand, within bioFat 809.993 kb on + strand, within bioFat 810.237 kb on + strand, within bioFat 810.237 kb on + strand, within bioFat 810.359 kb on + strand, within bioFat 810.362 kb on - strand, within bioFat 810.393 kb on - strand, within bioFat 810.414 kb on + strand, within bioFat 810.492 kb on + strand, within bioFat 810.492 kb on + strand, within bioFat 810.673 kb on + strandat 810.673 kb on - strandat 810.729 kb on + strandat 810.791 kb on + strandat 810.833 kb on + strand, within bioCat 810.971 kb on + strand, within bioCat 811.122 kb on + strand, within bioCat 811.122 kb on + strand, within bioCat 811.122 kb on + strand, within bioCat 811.122 kb on + strand, within bioCat 811.326 kb on + strand, within bioCat 811.326 kb on + strand, within bioCat 811.326 kb on + strand, within bioCat 811.366 kb on - strand, within bioCat 811.423 kb on + strand, within bioCat 811.423 kb on + strand, within bioCat 811.431 kb on - strandat 811.446 kb on - strandat 811.446 kb on - strandat 811.464 kb on - strandat 811.559 kb on + strandat 811.672 kb on + strand, within bioDat 811.720 kb on - strand, within bioDat 811.757 kb on + strand, within bioDat 812.000 kb on + strand, within bioDat 812.005 kb on - strand, within bioDat 812.005 kb on - strand, within bioDat 812.051 kb on + strand, within bioDat 812.051 kb on + strand, within bioDat 812.061 kb on - strand, within bioDat 812.295 kb on - strandat 812.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine 0.4095 mM (C)
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809,993 + bioF b0776 0.34 -0.3
809,993 + bioF b0776 0.34 +0.3
810,237 + bioF b0776 0.55 -0.4
810,237 + bioF b0776 0.55 -0.2
810,359 + bioF b0776 0.65 +0.5
810,362 - bioF b0776 0.66 -0.4
810,393 - bioF b0776 0.68 -0.2
810,414 + bioF b0776 0.70 +0.1
810,492 + bioF b0776 0.77 -0.7
810,492 + bioF b0776 0.77 -0.9
810,673 + -0.4
810,673 - -0.1
810,729 + +0.3
810,791 + +0.4
810,833 + bioC b0777 0.12 -0.3
810,971 + bioC b0777 0.30 -0.0
811,122 + bioC b0777 0.50 +0.1
811,122 + bioC b0777 0.50 -0.3
811,122 + bioC b0777 0.50 -0.1
811,122 + bioC b0777 0.50 -0.1
811,326 + bioC b0777 0.77 -0.2
811,326 + bioC b0777 0.77 -0.1
811,326 + bioC b0777 0.77 -1.9
811,366 - bioC b0777 0.82 +0.2
811,423 + bioC b0777 0.90 +1.0
811,423 + bioC b0777 0.90 -0.2
811,431 - -0.7
811,446 - +0.5
811,446 - +0.3
811,464 - -0.1
811,559 + -0.6
811,672 + bioD b0778 0.26 +1.0
811,720 - bioD b0778 0.33 +0.5
811,757 + bioD b0778 0.39 -0.3
812,000 + bioD b0778 0.75 +0.0
812,005 - bioD b0778 0.76 +0.6
812,005 - bioD b0778 0.76 +1.2
812,051 + bioD b0778 0.82 +0.2
812,051 + bioD b0778 0.82 +0.7
812,061 - bioD b0778 0.84 +0.5
812,295 - -0.7
812,353 - -0.9

Or see this region's nucleotide sequence