Strain Fitness in Escherichia coli BW25113 around b4331

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjiG and yjiH overlap by 4 nucleotidesyjiH and yjiI are separated by 249 nucleotidesyjiI and yjiJ are separated by 12 nucleotides b4329: yjiG - conserved inner membrane protein (NCBI), at 4,557,562 to 4,558,023 yjiG b4330: yjiH - orf, hypothetical protein (VIMSS), at 4,558,020 to 4,558,703 yjiH b4331: yjiI - orf, hypothetical protein (VIMSS), at 4,558,953 to 4,559,507 yjiI b4332: yjiJ - predicted inner membrane protein (NCBI), at 4,559,520 to 4,560,698 yjiJ Position (kb) 4558 4559 4560Strain fitness (log2 ratio) -2 -1 0 1 2at 4558.050 kb on - strandat 4558.104 kb on - strand, within yjiHat 4558.116 kb on + strand, within yjiHat 4558.181 kb on - strand, within yjiHat 4558.185 kb on + strand, within yjiHat 4558.211 kb on - strand, within yjiHat 4558.301 kb on + strand, within yjiHat 4558.328 kb on + strand, within yjiHat 4558.392 kb on + strand, within yjiHat 4558.392 kb on + strand, within yjiHat 4558.428 kb on + strand, within yjiHat 4558.741 kb on - strandat 4558.880 kb on - strandat 4559.040 kb on + strand, within yjiIat 4559.040 kb on + strand, within yjiIat 4559.045 kb on - strand, within yjiIat 4559.050 kb on + strand, within yjiIat 4559.050 kb on + strand, within yjiIat 4559.082 kb on + strand, within yjiIat 4559.082 kb on + strand, within yjiIat 4559.113 kb on + strand, within yjiIat 4559.141 kb on - strand, within yjiIat 4559.183 kb on - strand, within yjiIat 4559.196 kb on + strand, within yjiIat 4559.204 kb on - strand, within yjiIat 4559.204 kb on - strand, within yjiIat 4559.204 kb on - strand, within yjiIat 4559.286 kb on - strand, within yjiIat 4559.286 kb on - strand, within yjiIat 4559.338 kb on - strand, within yjiIat 4559.340 kb on - strand, within yjiIat 4559.361 kb on - strand, within yjiIat 4559.482 kb on - strandat 4559.542 kb on - strandat 4559.557 kb on + strandat 4559.575 kb on + strandat 4559.575 kb on + strandat 4559.644 kb on - strand, within yjiJat 4559.649 kb on - strand, within yjiJat 4559.651 kb on - strand, within yjiJat 4559.690 kb on - strand, within yjiJat 4559.734 kb on - strand, within yjiJat 4559.734 kb on - strand, within yjiJat 4559.747 kb on + strand, within yjiJat 4559.788 kb on - strand, within yjiJat 4559.882 kb on - strand, within yjiJat 4559.927 kb on + strand, within yjiJat 4559.927 kb on + strand, within yjiJat 4559.978 kb on - strand, within yjiJat 4559.984 kb on - strand, within yjiJat 4560.037 kb on + strand, within yjiJat 4560.047 kb on + strand, within yjiJat 4560.047 kb on - strand, within yjiJat 4560.047 kb on - strand, within yjiJat 4560.068 kb on - strand, within yjiJat 4560.068 kb on - strand, within yjiJat 4560.148 kb on + strand, within yjiJat 4560.150 kb on - strand, within yjiJat 4560.220 kb on + strand, within yjiJat 4560.223 kb on - strand, within yjiJat 4560.294 kb on - strand, within yjiJat 4560.353 kb on - strand, within yjiJat 4560.355 kb on + strand, within yjiJat 4560.460 kb on + strand, within yjiJat 4560.499 kb on + strand, within yjiJat 4560.505 kb on + strand, within yjiJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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4,558,050 - +0.2
4,558,104 - yjiH b4330 0.12 +0.0
4,558,116 + yjiH b4330 0.14 +0.2
4,558,181 - yjiH b4330 0.24 +0.2
4,558,185 + yjiH b4330 0.24 +0.1
4,558,211 - yjiH b4330 0.28 -1.8
4,558,301 + yjiH b4330 0.41 -0.3
4,558,328 + yjiH b4330 0.45 -0.4
4,558,392 + yjiH b4330 0.54 -2.3
4,558,392 + yjiH b4330 0.54 +0.0
4,558,428 + yjiH b4330 0.60 -0.5
4,558,741 - -0.5
4,558,880 - -0.5
4,559,040 + yjiI b4331 0.16 -0.5
4,559,040 + yjiI b4331 0.16 -0.6
4,559,045 - yjiI b4331 0.17 -0.3
4,559,050 + yjiI b4331 0.17 +0.2
4,559,050 + yjiI b4331 0.17 -0.6
4,559,082 + yjiI b4331 0.23 -0.0
4,559,082 + yjiI b4331 0.23 -2.0
4,559,113 + yjiI b4331 0.29 -0.4
4,559,141 - yjiI b4331 0.34 +1.8
4,559,183 - yjiI b4331 0.41 -0.5
4,559,196 + yjiI b4331 0.44 -0.4
4,559,204 - yjiI b4331 0.45 +0.1
4,559,204 - yjiI b4331 0.45 -0.1
4,559,204 - yjiI b4331 0.45 -1.0
4,559,286 - yjiI b4331 0.60 -0.2
4,559,286 - yjiI b4331 0.60 -0.6
4,559,338 - yjiI b4331 0.69 -0.4
4,559,340 - yjiI b4331 0.70 +0.1
4,559,361 - yjiI b4331 0.74 -0.9
4,559,482 - +0.4
4,559,542 - -0.3
4,559,557 + -0.0
4,559,575 + -0.5
4,559,575 + +0.1
4,559,644 - yjiJ b4332 0.11 -0.9
4,559,649 - yjiJ b4332 0.11 -0.4
4,559,651 - yjiJ b4332 0.11 +0.8
4,559,690 - yjiJ b4332 0.14 -1.6
4,559,734 - yjiJ b4332 0.18 -0.1
4,559,734 - yjiJ b4332 0.18 -0.1
4,559,747 + yjiJ b4332 0.19 +0.0
4,559,788 - yjiJ b4332 0.23 -0.3
4,559,882 - yjiJ b4332 0.31 +0.0
4,559,927 + yjiJ b4332 0.35 -0.4
4,559,927 + yjiJ b4332 0.35 -0.2
4,559,978 - yjiJ b4332 0.39 -0.7
4,559,984 - yjiJ b4332 0.39 +0.3
4,560,037 + yjiJ b4332 0.44 -0.5
4,560,047 + yjiJ b4332 0.45 -0.2
4,560,047 - yjiJ b4332 0.45 +0.5
4,560,047 - yjiJ b4332 0.45 -1.0
4,560,068 - yjiJ b4332 0.46 +0.5
4,560,068 - yjiJ b4332 0.46 -0.0
4,560,148 + yjiJ b4332 0.53 +0.5
4,560,150 - yjiJ b4332 0.53 +0.0
4,560,220 + yjiJ b4332 0.59 +0.1
4,560,223 - yjiJ b4332 0.60 +0.9
4,560,294 - yjiJ b4332 0.66 +1.1
4,560,353 - yjiJ b4332 0.71 -0.2
4,560,355 + yjiJ b4332 0.71 -1.4
4,560,460 + yjiJ b4332 0.80 +0.1
4,560,499 + yjiJ b4332 0.83 +0.0
4,560,505 + yjiJ b4332 0.84 -0.9

Or see this region's nucleotide sequence