Strain Fitness in Escherichia coli BW25113 around b3646

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinD and yicG are separated by 289 nucleotidesyicG and yicF overlap by 4 nucleotides b3645: dinD - DNA-damage-inducible protein (VIMSS), at 3,815,783 to 3,816,607 dinD b3646: yicG - orf, hypothetical protein (VIMSS), at 3,816,897 to 3,817,514 yicG b3647: yicF - putative enzyme (VIMSS), at 3,817,511 to 3,819,193 yicF Position (kb) 3816 3817 3818Strain fitness (log2 ratio) -2 -1 0 1at 3815.898 kb on + strand, within dinDat 3815.898 kb on - strand, within dinDat 3815.906 kb on + strand, within dinDat 3815.914 kb on - strand, within dinDat 3815.927 kb on + strand, within dinDat 3815.930 kb on + strand, within dinDat 3815.940 kb on + strand, within dinDat 3815.954 kb on + strand, within dinDat 3816.009 kb on - strand, within dinDat 3816.009 kb on - strand, within dinDat 3816.012 kb on + strand, within dinDat 3816.116 kb on - strand, within dinDat 3816.116 kb on - strand, within dinDat 3816.116 kb on - strand, within dinDat 3816.137 kb on + strand, within dinDat 3816.170 kb on + strand, within dinDat 3816.170 kb on + strand, within dinDat 3816.233 kb on + strand, within dinDat 3816.241 kb on - strand, within dinDat 3816.249 kb on - strand, within dinDat 3816.253 kb on + strand, within dinDat 3816.255 kb on + strand, within dinDat 3816.258 kb on + strand, within dinDat 3816.291 kb on + strand, within dinDat 3816.309 kb on - strand, within dinDat 3816.309 kb on - strand, within dinDat 3816.317 kb on - strand, within dinDat 3816.381 kb on + strand, within dinDat 3816.386 kb on - strand, within dinDat 3816.386 kb on - strand, within dinDat 3816.389 kb on - strand, within dinDat 3816.389 kb on - strand, within dinDat 3816.469 kb on + strand, within dinDat 3816.486 kb on - strand, within dinDat 3816.495 kb on + strand, within dinDat 3816.503 kb on - strand, within dinDat 3816.503 kb on - strand, within dinDat 3816.507 kb on + strand, within dinDat 3816.507 kb on + strand, within dinDat 3816.531 kb on + strandat 3816.561 kb on - strandat 3816.629 kb on + strandat 3816.632 kb on + strandat 3816.666 kb on + strandat 3816.670 kb on + strandat 3816.866 kb on - strandat 3816.908 kb on - strandat 3816.908 kb on - strandat 3816.908 kb on - strandat 3816.908 kb on - strandat 3816.934 kb on - strandat 3816.938 kb on + strandat 3816.938 kb on + strandat 3816.946 kb on - strandat 3816.947 kb on - strandat 3816.947 kb on - strandat 3816.961 kb on + strand, within yicGat 3816.966 kb on + strand, within yicGat 3816.966 kb on + strand, within yicGat 3816.986 kb on - strand, within yicGat 3816.986 kb on - strand, within yicGat 3817.027 kb on + strand, within yicGat 3817.027 kb on + strand, within yicGat 3817.051 kb on + strand, within yicGat 3817.052 kb on - strand, within yicGat 3817.057 kb on - strand, within yicGat 3817.087 kb on + strand, within yicGat 3817.087 kb on + strand, within yicGat 3817.146 kb on + strand, within yicGat 3817.149 kb on - strand, within yicGat 3817.149 kb on - strand, within yicGat 3817.207 kb on + strand, within yicGat 3817.215 kb on - strand, within yicGat 3817.231 kb on - strand, within yicGat 3817.285 kb on - strand, within yicGat 3817.285 kb on - strand, within yicGat 3817.328 kb on + strand, within yicGat 3817.328 kb on + strand, within yicGat 3817.335 kb on + strand, within yicGat 3817.345 kb on - strand, within yicGat 3817.371 kb on - strand, within yicGat 3817.376 kb on - strand, within yicGat 3817.376 kb on - strand, within yicGat 3817.378 kb on - strand, within yicGat 3817.391 kb on + strand, within yicGat 3817.401 kb on + strand, within yicGat 3817.401 kb on + strand, within yicGat 3817.433 kb on - strand, within yicGat 3817.485 kb on + strandat 3817.506 kb on - strandat 3817.607 kb on + strandat 3817.615 kb on - strandat 3817.615 kb on - strandat 3817.640 kb on - strandat 3817.665 kb on + strandat 3817.670 kb on + strandat 3817.673 kb on - strandat 3817.673 kb on - strandat 3817.708 kb on + strand, within yicFat 3817.716 kb on - strand, within yicFat 3817.795 kb on + strand, within yicFat 3817.795 kb on + strand, within yicFat 3817.828 kb on - strand, within yicFat 3817.828 kb on - strand, within yicFat 3817.877 kb on - strand, within yicFat 3817.877 kb on - strand, within yicFat 3817.897 kb on + strand, within yicFat 3817.900 kb on - strand, within yicFat 3817.918 kb on - strand, within yicFat 3817.918 kb on - strand, within yicFat 3817.939 kb on + strand, within yicFat 3818.035 kb on + strand, within yicFat 3818.043 kb on - strand, within yicFat 3818.043 kb on - strand, within yicFat 3818.225 kb on - strand, within yicFat 3818.255 kb on - strand, within yicFat 3818.255 kb on - strand, within yicFat 3818.289 kb on + strand, within yicFat 3818.304 kb on + strand, within yicFat 3818.375 kb on - strand, within yicFat 3818.375 kb on - strand, within yicFat 3818.388 kb on + strand, within yicFat 3818.390 kb on + strand, within yicFat 3818.400 kb on + strand, within yicFat 3818.400 kb on + strand, within yicFat 3818.439 kb on + strand, within yicFat 3818.496 kb on + strand, within yicF

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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3,815,898 + dinD b3645 0.14 -0.1
3,815,898 - dinD b3645 0.14 -1.4
3,815,906 + dinD b3645 0.15 +0.3
3,815,914 - dinD b3645 0.16 +0.3
3,815,927 + dinD b3645 0.17 -0.4
3,815,930 + dinD b3645 0.18 -1.0
3,815,940 + dinD b3645 0.19 -0.7
3,815,954 + dinD b3645 0.21 +0.0
3,816,009 - dinD b3645 0.27 -0.7
3,816,009 - dinD b3645 0.27 +0.1
3,816,012 + dinD b3645 0.28 +0.2
3,816,116 - dinD b3645 0.40 -0.7
3,816,116 - dinD b3645 0.40 -0.0
3,816,116 - dinD b3645 0.40 -0.2
3,816,137 + dinD b3645 0.43 -0.3
3,816,170 + dinD b3645 0.47 +0.7
3,816,170 + dinD b3645 0.47 +0.6
3,816,233 + dinD b3645 0.55 +0.1
3,816,241 - dinD b3645 0.56 -0.6
3,816,249 - dinD b3645 0.56 -1.2
3,816,253 + dinD b3645 0.57 -0.2
3,816,255 + dinD b3645 0.57 -0.2
3,816,258 + dinD b3645 0.58 +0.7
3,816,291 + dinD b3645 0.62 +0.5
3,816,309 - dinD b3645 0.64 +0.0
3,816,309 - dinD b3645 0.64 +0.9
3,816,317 - dinD b3645 0.65 -0.0
3,816,381 + dinD b3645 0.72 +0.0
3,816,386 - dinD b3645 0.73 +0.6
3,816,386 - dinD b3645 0.73 -1.1
3,816,389 - dinD b3645 0.73 -0.5
3,816,389 - dinD b3645 0.73 +0.2
3,816,469 + dinD b3645 0.83 -0.1
3,816,486 - dinD b3645 0.85 -1.6
3,816,495 + dinD b3645 0.86 -0.6
3,816,503 - dinD b3645 0.87 -0.1
3,816,503 - dinD b3645 0.87 +1.7
3,816,507 + dinD b3645 0.88 -0.4
3,816,507 + dinD b3645 0.88 +0.1
3,816,531 + +0.5
3,816,561 - -0.8
3,816,629 + -0.6
3,816,632 + -1.3
3,816,666 + -0.6
3,816,670 + -0.6
3,816,866 - -1.6
3,816,908 - -0.8
3,816,908 - +0.1
3,816,908 - -0.7
3,816,908 - +0.9
3,816,934 - -0.6
3,816,938 + -0.9
3,816,938 + -1.2
3,816,946 - -0.5
3,816,947 - -1.2
3,816,947 - -0.4
3,816,961 + yicG b3646 0.10 -1.0
3,816,966 + yicG b3646 0.11 +0.2
3,816,966 + yicG b3646 0.11 -0.3
3,816,986 - yicG b3646 0.14 +1.1
3,816,986 - yicG b3646 0.14 +0.2
3,817,027 + yicG b3646 0.21 -0.3
3,817,027 + yicG b3646 0.21 -0.1
3,817,051 + yicG b3646 0.25 -0.1
3,817,052 - yicG b3646 0.25 -0.3
3,817,057 - yicG b3646 0.26 +0.3
3,817,087 + yicG b3646 0.31 +0.3
3,817,087 + yicG b3646 0.31 -1.8
3,817,146 + yicG b3646 0.40 +0.2
3,817,149 - yicG b3646 0.41 +0.2
3,817,149 - yicG b3646 0.41 +0.7
3,817,207 + yicG b3646 0.50 -0.7
3,817,215 - yicG b3646 0.51 -0.9
3,817,231 - yicG b3646 0.54 +0.2
3,817,285 - yicG b3646 0.63 +0.6
3,817,285 - yicG b3646 0.63 +0.0
3,817,328 + yicG b3646 0.70 -0.1
3,817,328 + yicG b3646 0.70 -0.8
3,817,335 + yicG b3646 0.71 +0.6
3,817,345 - yicG b3646 0.72 +0.4
3,817,371 - yicG b3646 0.77 -0.6
3,817,376 - yicG b3646 0.78 -0.6
3,817,376 - yicG b3646 0.78 +0.4
3,817,378 - yicG b3646 0.78 -0.1
3,817,391 + yicG b3646 0.80 -0.1
3,817,401 + yicG b3646 0.82 +0.7
3,817,401 + yicG b3646 0.82 +0.2
3,817,433 - yicG b3646 0.87 -0.0
3,817,485 + +0.5
3,817,506 - +0.3
3,817,607 + +1.0
3,817,615 - -0.8
3,817,615 - -0.6
3,817,640 - -0.4
3,817,665 + -0.8
3,817,670 + -0.1
3,817,673 - -0.4
3,817,673 - +0.6
3,817,708 + yicF b3647 0.12 -0.1
3,817,716 - yicF b3647 0.12 +0.5
3,817,795 + yicF b3647 0.17 +0.6
3,817,795 + yicF b3647 0.17 -0.2
3,817,828 - yicF b3647 0.19 +0.4
3,817,828 - yicF b3647 0.19 +0.8
3,817,877 - yicF b3647 0.22 -0.1
3,817,877 - yicF b3647 0.22 -1.5
3,817,897 + yicF b3647 0.23 -0.2
3,817,900 - yicF b3647 0.23 -0.0
3,817,918 - yicF b3647 0.24 -0.4
3,817,918 - yicF b3647 0.24 +1.4
3,817,939 + yicF b3647 0.25 -0.3
3,818,035 + yicF b3647 0.31 -1.0
3,818,043 - yicF b3647 0.32 -1.1
3,818,043 - yicF b3647 0.32 +0.0
3,818,225 - yicF b3647 0.42 -0.6
3,818,255 - yicF b3647 0.44 +0.6
3,818,255 - yicF b3647 0.44 +0.7
3,818,289 + yicF b3647 0.46 -0.3
3,818,304 + yicF b3647 0.47 -0.5
3,818,375 - yicF b3647 0.51 -1.4
3,818,375 - yicF b3647 0.51 +0.9
3,818,388 + yicF b3647 0.52 -0.5
3,818,390 + yicF b3647 0.52 -0.2
3,818,400 + yicF b3647 0.53 -0.6
3,818,400 + yicF b3647 0.53 -0.9
3,818,439 + yicF b3647 0.55 -0.6
3,818,496 + yicF b3647 0.59 -0.9

Or see this region's nucleotide sequence