Strain Fitness in Escherichia coli BW25113 around b1661

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhC and cfa are separated by 290 nucleotidescfa and ribC are separated by 39 nucleotidesribC and mdtK are separated by 214 nucleotides b1660: ydhC - predicted transporter (NCBI), at 1,737,935 to 1,739,146 ydhC b1661: cfa - cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI), at 1,739,437 to 1,740,585 cfa b1662: ribC - riboflavin synthase subunit alpha (NCBI), at 1,740,625 to 1,741,266 ribC b1663: mdtK - multidrug efflux protein NorM (NCBI), at 1,741,481 to 1,742,854 mdtK Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -1 0 1 2 3at 1738.723 kb on - strand, within ydhCat 1738.723 kb on - strand, within ydhCat 1738.896 kb on - strand, within ydhCat 1738.945 kb on - strand, within ydhCat 1738.945 kb on - strand, within ydhCat 1738.966 kb on - strand, within ydhCat 1739.263 kb on + strandat 1739.431 kb on - strandat 1739.431 kb on - strandat 1739.458 kb on - strandat 1739.473 kb on - strandat 1739.487 kb on + strandat 1739.797 kb on + strand, within cfaat 1740.198 kb on - strand, within cfaat 1740.226 kb on - strand, within cfaat 1740.389 kb on + strand, within cfaat 1740.447 kb on + strand, within cfaat 1740.447 kb on + strand, within cfaat 1740.449 kb on + strand, within cfaat 1740.449 kb on + strand, within cfaat 1740.505 kb on - strandat 1740.538 kb on + strandat 1741.305 kb on + strandat 1741.305 kb on + strandat 1741.328 kb on - strandat 1741.333 kb on - strandat 1741.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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1,738,723 - ydhC b1660 0.65 +1.1
1,738,723 - ydhC b1660 0.65 -0.7
1,738,896 - ydhC b1660 0.79 -0.8
1,738,945 - ydhC b1660 0.83 +0.0
1,738,945 - ydhC b1660 0.83 -0.4
1,738,966 - ydhC b1660 0.85 -0.2
1,739,263 + +0.5
1,739,431 - +0.1
1,739,431 - +0.3
1,739,458 - -0.3
1,739,473 - +1.1
1,739,487 + -0.6
1,739,797 + cfa b1661 0.31 +1.0
1,740,198 - cfa b1661 0.66 +3.1
1,740,226 - cfa b1661 0.69 -0.5
1,740,389 + cfa b1661 0.83 +0.1
1,740,447 + cfa b1661 0.88 +0.9
1,740,447 + cfa b1661 0.88 +0.5
1,740,449 + cfa b1661 0.88 -0.3
1,740,449 + cfa b1661 0.88 +0.3
1,740,505 - -0.2
1,740,538 + +0.3
1,741,305 + -1.5
1,741,305 + +0.2
1,741,328 - +0.0
1,741,333 - +0.0
1,741,342 + -0.1

Or see this region's nucleotide sequence