Strain Fitness in Escherichia coli BW25113 around b3934

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsN and cytR are separated by 91 nucleotidescytR and priA are separated by 155 nucleotides b3933: ftsN - essential cell division protein (NCBI), at 4,120,403 to 4,121,362 ftsN b3934: cytR - DNA-binding transcriptional dual regulator (NCBI), at 4,121,454 to 4,122,479 cytR b3935: priA - primosome assembly protein PriA (NCBI), at 4,122,635 to 4,124,833 priA Position (kb) 4121 4122 4123Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 4120.456 kb on + strandat 4120.456 kb on - strandat 4120.464 kb on - strandat 4120.518 kb on + strand, within ftsNat 4120.518 kb on + strand, within ftsNat 4120.564 kb on - strand, within ftsNat 4120.564 kb on - strand, within ftsNat 4120.569 kb on - strand, within ftsNat 4120.575 kb on + strand, within ftsNat 4120.575 kb on + strand, within ftsNat 4120.578 kb on - strand, within ftsNat 4120.601 kb on - strand, within ftsNat 4120.601 kb on - strand, within ftsNat 4120.601 kb on - strand, within ftsNat 4120.607 kb on + strand, within ftsNat 4120.607 kb on + strand, within ftsNat 4120.607 kb on + strand, within ftsNat 4120.615 kb on - strand, within ftsNat 4120.615 kb on - strand, within ftsNat 4120.615 kb on - strand, within ftsNat 4120.651 kb on + strand, within ftsNat 4120.653 kb on - strand, within ftsNat 4120.653 kb on - strand, within ftsNat 4120.670 kb on - strand, within ftsNat 4120.670 kb on - strand, within ftsNat 4120.681 kb on + strand, within ftsNat 4120.695 kb on + strand, within ftsNat 4120.695 kb on + strand, within ftsNat 4120.715 kb on - strand, within ftsNat 4120.740 kb on + strand, within ftsNat 4120.740 kb on + strand, within ftsNat 4120.763 kb on - strand, within ftsNat 4120.765 kb on + strand, within ftsNat 4120.767 kb on + strand, within ftsNat 4120.773 kb on - strand, within ftsNat 4120.784 kb on + strand, within ftsNat 4120.786 kb on + strand, within ftsNat 4120.786 kb on + strand, within ftsNat 4120.787 kb on - strand, within ftsNat 4120.845 kb on + strand, within ftsNat 4120.855 kb on + strand, within ftsNat 4120.858 kb on - strand, within ftsNat 4120.865 kb on + strand, within ftsNat 4120.899 kb on - strand, within ftsNat 4120.899 kb on - strand, within ftsNat 4120.919 kb on + strand, within ftsNat 4120.929 kb on - strand, within ftsNat 4120.929 kb on - strand, within ftsNat 4121.001 kb on - strand, within ftsNat 4121.001 kb on - strand, within ftsNat 4121.375 kb on + strandat 4121.375 kb on + strandat 4121.428 kb on + strandat 4121.436 kb on - strandat 4121.436 kb on - strandat 4121.436 kb on - strandat 4121.452 kb on + strandat 4121.460 kb on - strandat 4121.483 kb on - strandat 4121.499 kb on - strandat 4121.512 kb on - strandat 4121.512 kb on - strandat 4121.517 kb on + strandat 4121.517 kb on + strandat 4121.530 kb on + strandat 4121.530 kb on - strandat 4121.531 kb on - strandat 4121.553 kb on - strandat 4121.553 kb on - strandat 4121.558 kb on - strand, within cytRat 4121.603 kb on - strand, within cytRat 4121.714 kb on + strand, within cytRat 4121.714 kb on + strand, within cytRat 4121.818 kb on - strand, within cytRat 4121.818 kb on - strand, within cytRat 4121.827 kb on - strand, within cytRat 4121.847 kb on + strand, within cytRat 4121.847 kb on + strand, within cytRat 4121.852 kb on + strand, within cytRat 4121.858 kb on + strand, within cytRat 4121.895 kb on + strand, within cytRat 4121.895 kb on + strand, within cytRat 4121.905 kb on - strand, within cytRat 4121.906 kb on + strand, within cytRat 4121.914 kb on - strand, within cytRat 4121.923 kb on + strand, within cytRat 4121.970 kb on + strand, within cytRat 4121.982 kb on + strand, within cytRat 4121.987 kb on + strand, within cytRat 4121.989 kb on + strand, within cytRat 4121.990 kb on - strand, within cytRat 4121.990 kb on - strand, within cytRat 4122.053 kb on - strand, within cytRat 4122.053 kb on - strand, within cytRat 4122.088 kb on - strand, within cytRat 4122.098 kb on - strand, within cytRat 4122.104 kb on - strand, within cytRat 4122.121 kb on - strand, within cytRat 4122.185 kb on - strand, within cytRat 4122.190 kb on - strand, within cytRat 4122.190 kb on - strand, within cytRat 4122.203 kb on + strand, within cytRat 4122.247 kb on + strand, within cytRat 4122.259 kb on + strand, within cytRat 4122.277 kb on - strand, within cytRat 4122.277 kb on - strand, within cytRat 4122.312 kb on - strand, within cytRat 4122.353 kb on + strand, within cytRat 4122.353 kb on + strand, within cytRat 4122.361 kb on - strand, within cytRat 4122.364 kb on + strand, within cytRat 4122.387 kb on + strandat 4122.395 kb on - strandat 4122.499 kb on + strandat 4122.502 kb on + strandat 4122.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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4,120,456 + -1.5
4,120,456 - +0.2
4,120,464 - +0.3
4,120,518 + ftsN b3933 0.12 +0.1
4,120,518 + ftsN b3933 0.12 -0.5
4,120,564 - ftsN b3933 0.17 +0.6
4,120,564 - ftsN b3933 0.17 +0.6
4,120,569 - ftsN b3933 0.17 -1.4
4,120,575 + ftsN b3933 0.18 -0.5
4,120,575 + ftsN b3933 0.18 +3.0
4,120,578 - ftsN b3933 0.18 +0.3
4,120,601 - ftsN b3933 0.21 +0.0
4,120,601 - ftsN b3933 0.21 +0.2
4,120,601 - ftsN b3933 0.21 -0.0
4,120,607 + ftsN b3933 0.21 -0.3
4,120,607 + ftsN b3933 0.21 +0.1
4,120,607 + ftsN b3933 0.21 -1.5
4,120,615 - ftsN b3933 0.22 +1.0
4,120,615 - ftsN b3933 0.22 +0.2
4,120,615 - ftsN b3933 0.22 +0.7
4,120,651 + ftsN b3933 0.26 -0.5
4,120,653 - ftsN b3933 0.26 -0.7
4,120,653 - ftsN b3933 0.26 +0.0
4,120,670 - ftsN b3933 0.28 +0.0
4,120,670 - ftsN b3933 0.28 -0.2
4,120,681 + ftsN b3933 0.29 +0.1
4,120,695 + ftsN b3933 0.30 -1.0
4,120,695 + ftsN b3933 0.30 +0.1
4,120,715 - ftsN b3933 0.33 -1.0
4,120,740 + ftsN b3933 0.35 -0.7
4,120,740 + ftsN b3933 0.35 +0.0
4,120,763 - ftsN b3933 0.38 +0.9
4,120,765 + ftsN b3933 0.38 -1.1
4,120,767 + ftsN b3933 0.38 -0.1
4,120,773 - ftsN b3933 0.39 +0.8
4,120,784 + ftsN b3933 0.40 -0.2
4,120,786 + ftsN b3933 0.40 +0.7
4,120,786 + ftsN b3933 0.40 +0.9
4,120,787 - ftsN b3933 0.40 +0.2
4,120,845 + ftsN b3933 0.46 -1.0
4,120,855 + ftsN b3933 0.47 +0.9
4,120,858 - ftsN b3933 0.47 -0.1
4,120,865 + ftsN b3933 0.48 +0.1
4,120,899 - ftsN b3933 0.52 +0.6
4,120,899 - ftsN b3933 0.52 -1.1
4,120,919 + ftsN b3933 0.54 +1.5
4,120,929 - ftsN b3933 0.55 +0.2
4,120,929 - ftsN b3933 0.55 -0.5
4,121,001 - ftsN b3933 0.62 +0.2
4,121,001 - ftsN b3933 0.62 +0.7
4,121,375 + -0.6
4,121,375 + +0.2
4,121,428 + +1.2
4,121,436 - -0.4
4,121,436 - +0.1
4,121,436 - +1.2
4,121,452 + +1.3
4,121,460 - +0.1
4,121,483 - +8.0
4,121,499 - +7.9
4,121,512 - +7.6
4,121,512 - +7.8
4,121,517 + +7.7
4,121,517 + +8.0
4,121,530 + +7.8
4,121,530 - +7.9
4,121,531 - +7.7
4,121,553 - +7.7
4,121,553 - +7.3
4,121,558 - cytR b3934 0.10 +8.3
4,121,603 - cytR b3934 0.15 +8.1
4,121,714 + cytR b3934 0.25 +7.8
4,121,714 + cytR b3934 0.25 +8.1
4,121,818 - cytR b3934 0.35 +8.0
4,121,818 - cytR b3934 0.35 +8.3
4,121,827 - cytR b3934 0.36 +7.8
4,121,847 + cytR b3934 0.38 +7.6
4,121,847 + cytR b3934 0.38 +8.0
4,121,852 + cytR b3934 0.39 +8.0
4,121,858 + cytR b3934 0.39 +7.5
4,121,895 + cytR b3934 0.43 +8.0
4,121,895 + cytR b3934 0.43 +7.9
4,121,905 - cytR b3934 0.44 +8.0
4,121,906 + cytR b3934 0.44 +8.0
4,121,914 - cytR b3934 0.45 +8.0
4,121,923 + cytR b3934 0.46 +7.9
4,121,970 + cytR b3934 0.50 +8.0
4,121,982 + cytR b3934 0.51 +7.9
4,121,987 + cytR b3934 0.52 +7.4
4,121,989 + cytR b3934 0.52 +7.9
4,121,990 - cytR b3934 0.52 +7.9
4,121,990 - cytR b3934 0.52 +8.3
4,122,053 - cytR b3934 0.58 +8.3
4,122,053 - cytR b3934 0.58 +7.7
4,122,088 - cytR b3934 0.62 +8.0
4,122,098 - cytR b3934 0.63 +7.6
4,122,104 - cytR b3934 0.63 +7.5
4,122,121 - cytR b3934 0.65 +8.2
4,122,185 - cytR b3934 0.71 +8.0
4,122,190 - cytR b3934 0.72 +8.1
4,122,190 - cytR b3934 0.72 +7.7
4,122,203 + cytR b3934 0.73 +7.9
4,122,247 + cytR b3934 0.77 +7.8
4,122,259 + cytR b3934 0.78 +7.7
4,122,277 - cytR b3934 0.80 +8.0
4,122,277 - cytR b3934 0.80 +8.2
4,122,312 - cytR b3934 0.84 +4.1
4,122,353 + cytR b3934 0.88 +7.6
4,122,353 + cytR b3934 0.88 +8.1
4,122,361 - cytR b3934 0.88 +8.1
4,122,364 + cytR b3934 0.89 +7.4
4,122,387 + +7.9
4,122,395 - +7.1
4,122,499 + -0.8
4,122,502 + +0.2
4,122,647 - +1.5

Or see this region's nucleotide sequence