Strain Fitness in Escherichia coli BW25113 around b3146
Experiment: Inosine 0.3728 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Inosine 0.3728 mM (C) |
---|---|---|---|---|---|
remove | |||||
3,289,497 | + | yraK | b3145 | 0.12 | -0.5 |
3,289,525 | + | yraK | b3145 | 0.15 | +1.0 |
3,289,553 | - | yraK | b3145 | 0.17 | -0.0 |
3,289,553 | - | yraK | b3145 | 0.17 | -0.1 |
3,289,567 | + | yraK | b3145 | 0.19 | +0.2 |
3,289,619 | - | yraK | b3145 | 0.23 | -0.7 |
3,289,619 | - | yraK | b3145 | 0.23 | +0.4 |
3,289,624 | - | yraK | b3145 | 0.24 | +1.2 |
3,289,624 | - | yraK | b3145 | 0.24 | -1.4 |
3,289,637 | + | yraK | b3145 | 0.25 | +0.7 |
3,289,707 | + | yraK | b3145 | 0.32 | -0.9 |
3,289,707 | + | yraK | b3145 | 0.32 | +1.0 |
3,289,716 | - | yraK | b3145 | 0.32 | +0.8 |
3,289,716 | - | yraK | b3145 | 0.32 | +0.5 |
3,289,719 | - | yraK | b3145 | 0.33 | -0.9 |
3,289,721 | - | yraK | b3145 | 0.33 | +0.6 |
3,289,722 | - | yraK | b3145 | 0.33 | +0.6 |
3,289,784 | - | yraK | b3145 | 0.39 | -0.6 |
3,289,784 | - | yraK | b3145 | 0.39 | -1.3 |
3,289,788 | + | yraK | b3145 | 0.39 | +0.8 |
3,289,788 | + | yraK | b3145 | 0.39 | +0.0 |
3,289,807 | - | yraK | b3145 | 0.41 | +0.2 |
3,289,833 | + | yraK | b3145 | 0.43 | +0.4 |
3,289,843 | + | yraK | b3145 | 0.44 | -0.0 |
3,289,864 | - | yraK | b3145 | 0.46 | -0.0 |
3,289,864 | - | yraK | b3145 | 0.46 | -0.1 |
3,289,866 | + | yraK | b3145 | 0.46 | +0.1 |
3,289,874 | - | yraK | b3145 | 0.47 | -0.0 |
3,289,874 | - | yraK | b3145 | 0.47 | +0.4 |
3,289,874 | - | yraK | b3145 | 0.47 | +1.1 |
3,289,874 | - | yraK | b3145 | 0.47 | -1.4 |
3,289,947 | + | yraK | b3145 | 0.53 | +0.1 |
3,290,014 | + | yraK | b3145 | 0.60 | -0.3 |
3,290,015 | + | yraK | b3145 | 0.60 | -1.2 |
3,290,015 | + | yraK | b3145 | 0.60 | -0.3 |
3,290,023 | - | yraK | b3145 | 0.60 | +0.3 |
3,290,023 | - | yraK | b3145 | 0.60 | +1.1 |
3,290,023 | - | yraK | b3145 | 0.60 | +0.1 |
3,290,078 | - | yraK | b3145 | 0.65 | +0.7 |
3,290,078 | - | yraK | b3145 | 0.65 | +1.1 |
3,290,096 | + | yraK | b3145 | 0.67 | -0.3 |
3,290,103 | - | yraK | b3145 | 0.68 | +0.2 |
3,290,204 | - | yraK | b3145 | 0.77 | -0.8 |
3,290,218 | + | yraK | b3145 | 0.78 | +0.4 |
3,290,220 | + | yraK | b3145 | 0.78 | -0.6 |
3,290,220 | + | yraK | b3145 | 0.78 | +0.9 |
3,290,245 | + | yraK | b3145 | 0.81 | -0.4 |
3,290,246 | + | yraK | b3145 | 0.81 | +0.1 |
3,290,246 | + | yraK | b3145 | 0.81 | +0.1 |
3,290,352 | - | -0.5 | |||
3,290,352 | - | -0.6 | |||
3,290,378 | + | -0.4 | |||
3,290,401 | - | -0.9 | |||
3,290,436 | - | -0.0 | |||
3,290,527 | - | -0.7 | |||
3,290,529 | - | +0.4 | |||
3,290,594 | + | yraL | b3146 | 0.11 | +0.4 |
3,290,746 | - | yraL | b3146 | 0.29 | +0.1 |
3,290,746 | - | yraL | b3146 | 0.29 | +0.6 |
3,290,774 | - | yraL | b3146 | 0.32 | +1.5 |
3,290,774 | - | yraL | b3146 | 0.32 | +0.4 |
3,290,781 | - | yraL | b3146 | 0.33 | -0.4 |
3,290,826 | - | yraL | b3146 | 0.38 | -0.1 |
3,290,827 | + | yraL | b3146 | 0.38 | +2.3 |
3,290,827 | + | yraL | b3146 | 0.38 | +0.6 |
3,290,835 | - | yraL | b3146 | 0.39 | +0.7 |
3,290,849 | - | yraL | b3146 | 0.41 | +0.3 |
3,290,849 | - | yraL | b3146 | 0.41 | -0.3 |
3,290,872 | - | yraL | b3146 | 0.44 | +0.4 |
3,290,872 | - | yraL | b3146 | 0.44 | +0.9 |
3,290,985 | - | yraL | b3146 | 0.57 | +0.2 |
3,290,992 | + | yraL | b3146 | 0.57 | -1.6 |
3,291,039 | + | yraL | b3146 | 0.63 | -0.6 |
3,291,039 | + | yraL | b3146 | 0.63 | +1.8 |
3,291,051 | + | yraL | b3146 | 0.64 | +0.5 |
3,291,061 | + | yraL | b3146 | 0.66 | +1.2 |
3,291,109 | + | yraL | b3146 | 0.71 | +0.0 |
3,291,118 | - | yraL | b3146 | 0.72 | +0.2 |
3,291,165 | - | yraL | b3146 | 0.78 | +0.2 |
3,291,212 | + | yraL | b3146 | 0.83 | -1.3 |
3,291,361 | + | -0.8 | |||
3,291,426 | - | -1.3 | |||
3,291,464 | + | -0.1 | |||
3,291,464 | + | -0.3 | |||
3,291,521 | - | -0.0 | |||
3,291,521 | - | +0.1 | |||
3,291,523 | + | +0.3 | |||
3,291,523 | + | -0.7 | |||
3,291,530 | + | +0.2 | |||
3,291,530 | + | +0.7 | |||
3,291,530 | + | +0.6 | |||
3,291,548 | + | -0.8 | |||
3,291,601 | + | -1.1 | |||
3,291,601 | + | -0.2 | |||
3,291,684 | - | yraM | b3147 | 0.13 | +0.0 |
3,291,703 | - | yraM | b3147 | 0.14 | -0.2 |
3,291,707 | + | yraM | b3147 | 0.14 | +0.4 |
3,291,713 | - | yraM | b3147 | 0.14 | +0.4 |
3,291,713 | - | yraM | b3147 | 0.14 | -2.0 |
3,291,720 | + | yraM | b3147 | 0.15 | -0.9 |
3,291,720 | + | yraM | b3147 | 0.15 | +0.4 |
3,291,749 | - | yraM | b3147 | 0.16 | -0.0 |
3,291,750 | - | yraM | b3147 | 0.16 | -0.2 |
3,291,838 | - | yraM | b3147 | 0.20 | -0.7 |
3,291,949 | + | yraM | b3147 | 0.26 | -0.8 |
3,291,949 | + | yraM | b3147 | 0.26 | -0.2 |
3,291,985 | + | yraM | b3147 | 0.28 | -0.1 |
3,291,985 | + | yraM | b3147 | 0.28 | -1.1 |
3,292,008 | - | yraM | b3147 | 0.29 | -0.3 |
3,292,071 | + | yraM | b3147 | 0.32 | -0.1 |
3,292,071 | - | yraM | b3147 | 0.32 | -0.6 |
3,292,071 | - | yraM | b3147 | 0.32 | +0.6 |
3,292,133 | - | yraM | b3147 | 0.35 | -0.1 |
3,292,133 | - | yraM | b3147 | 0.35 | -0.5 |
3,292,227 | - | yraM | b3147 | 0.40 | +0.1 |
3,292,232 | + | yraM | b3147 | 0.40 | -0.1 |
3,292,237 | - | yraM | b3147 | 0.40 | -0.2 |
3,292,304 | - | yraM | b3147 | 0.43 | +0.3 |
3,292,316 | - | yraM | b3147 | 0.44 | +0.0 |
3,292,316 | - | yraM | b3147 | 0.44 | -0.6 |
Or see this region's nucleotide sequence