Strain Fitness in Escherichia coli BW25113 around b2421

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfeK and yfeS are separated by 32 nucleotidesyfeS and cysM are separated by 188 nucleotidescysM and cysA are separated by 133 nucleotides b2419: yfeK - hypothetical protein (NCBI), at 2,535,364 to 2,535,738 yfeK b2420: yfeS - hypothetical protein (NCBI), at 2,535,771 to 2,536,505 yfeS b2421: cysM - cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI), at 2,536,694 to 2,537,605 cysM b2422: cysA - sulfate/thiosulfate transporter subunit (NCBI), at 2,537,739 to 2,538,836 cysA Position (kb) 2536 2537 2538Strain fitness (log2 ratio) -2 -1 0 1 2at 2535.716 kb on - strandat 2535.916 kb on + strand, within yfeSat 2536.076 kb on + strand, within yfeSat 2536.093 kb on - strand, within yfeSat 2536.093 kb on - strand, within yfeSat 2536.129 kb on + strand, within yfeSat 2536.213 kb on + strand, within yfeSat 2536.254 kb on - strand, within yfeSat 2536.282 kb on - strand, within yfeSat 2536.292 kb on - strand, within yfeSat 2536.299 kb on + strand, within yfeSat 2536.299 kb on + strand, within yfeSat 2536.307 kb on - strand, within yfeSat 2536.307 kb on - strand, within yfeSat 2536.319 kb on + strand, within yfeSat 2536.329 kb on - strand, within yfeSat 2536.340 kb on + strand, within yfeSat 2536.343 kb on - strand, within yfeSat 2536.370 kb on + strand, within yfeSat 2536.370 kb on + strand, within yfeSat 2536.448 kb on - strandat 2536.448 kb on - strandat 2536.531 kb on + strandat 2536.700 kb on - strandat 2536.702 kb on - strandat 2536.906 kb on + strand, within cysMat 2537.014 kb on - strand, within cysMat 2537.014 kb on - strand, within cysMat 2537.041 kb on + strand, within cysMat 2537.041 kb on + strand, within cysMat 2537.148 kb on + strand, within cysMat 2537.148 kb on + strand, within cysMat 2537.578 kb on + strandat 2537.578 kb on + strandat 2537.849 kb on + strand, within cysAat 2537.862 kb on - strand, within cysAat 2537.903 kb on - strand, within cysAat 2537.963 kb on - strand, within cysAat 2538.033 kb on + strand, within cysAat 2538.037 kb on - strand, within cysAat 2538.054 kb on - strand, within cysAat 2538.054 kb on - strand, within cysAat 2538.084 kb on - strand, within cysAat 2538.108 kb on - strand, within cysAat 2538.114 kb on + strand, within cysAat 2538.193 kb on + strand, within cysAat 2538.193 kb on + strand, within cysAat 2538.224 kb on + strand, within cysAat 2538.224 kb on + strand, within cysAat 2538.334 kb on - strand, within cysAat 2538.334 kb on - strand, within cysAat 2538.336 kb on - strand, within cysA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
2,535,716 - -0.9
2,535,916 + yfeS b2420 0.20 +0.3
2,536,076 + yfeS b2420 0.41 +1.9
2,536,093 - yfeS b2420 0.44 +0.7
2,536,093 - yfeS b2420 0.44 +0.5
2,536,129 + yfeS b2420 0.49 +0.5
2,536,213 + yfeS b2420 0.60 +0.5
2,536,254 - yfeS b2420 0.66 +0.3
2,536,282 - yfeS b2420 0.70 -1.2
2,536,292 - yfeS b2420 0.71 +0.6
2,536,299 + yfeS b2420 0.72 -0.8
2,536,299 + yfeS b2420 0.72 -0.5
2,536,307 - yfeS b2420 0.73 -0.7
2,536,307 - yfeS b2420 0.73 +1.8
2,536,319 + yfeS b2420 0.75 -0.6
2,536,329 - yfeS b2420 0.76 -1.4
2,536,340 + yfeS b2420 0.77 -0.0
2,536,343 - yfeS b2420 0.78 +0.0
2,536,370 + yfeS b2420 0.81 -0.2
2,536,370 + yfeS b2420 0.81 -1.1
2,536,448 - +0.7
2,536,448 - +1.5
2,536,531 + +0.1
2,536,700 - -0.2
2,536,702 - -0.6
2,536,906 + cysM b2421 0.23 +0.5
2,537,014 - cysM b2421 0.35 +0.0
2,537,014 - cysM b2421 0.35 +1.2
2,537,041 + cysM b2421 0.38 +0.1
2,537,041 + cysM b2421 0.38 +0.4
2,537,148 + cysM b2421 0.50 +0.3
2,537,148 + cysM b2421 0.50 -0.0
2,537,578 + +0.6
2,537,578 + +0.0
2,537,849 + cysA b2422 0.10 -1.0
2,537,862 - cysA b2422 0.11 -1.4
2,537,903 - cysA b2422 0.15 -0.2
2,537,963 - cysA b2422 0.20 -0.4
2,538,033 + cysA b2422 0.27 -1.3
2,538,037 - cysA b2422 0.27 -0.9
2,538,054 - cysA b2422 0.29 +0.0
2,538,054 - cysA b2422 0.29 -1.0
2,538,084 - cysA b2422 0.31 -1.1
2,538,108 - cysA b2422 0.34 -1.9
2,538,114 + cysA b2422 0.34 -0.5
2,538,193 + cysA b2422 0.41 -0.6
2,538,193 + cysA b2422 0.41 -0.7
2,538,224 + cysA b2422 0.44 -0.2
2,538,224 + cysA b2422 0.44 -0.3
2,538,334 - cysA b2422 0.54 -0.2
2,538,334 - cysA b2422 0.54 -1.8
2,538,336 - cysA b2422 0.54 -0.6

Or see this region's nucleotide sequence