Strain Fitness in Escherichia coli BW25113 around b0994

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttorS and torT are separated by 82 nucleotidestorT and torR overlap by 28 nucleotidestorR and torC are separated by 129 nucleotides b0993: torS - sensor protein torS (regulator TorR) (VIMSS), at 1,052,657 to 1,055,401 torS b0994: torT - periplasmic sensory protein associated with the TorRS two-component regulatory system (NCBI), at 1,055,484 to 1,056,512 torT b0995: torR - DNA-binding response regulator in two-component regulatory system with TorS (NCBI), at 1,056,485 to 1,057,177 torR b0996: torC - trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit (NCBI), at 1,057,307 to 1,058,479 torC Position (kb) 1055 1056 1057Strain fitness (log2 ratio) -2 -1 0 1at 1054.620 kb on + strand, within torSat 1054.643 kb on - strand, within torSat 1054.643 kb on - strand, within torSat 1054.773 kb on + strand, within torSat 1054.773 kb on + strand, within torSat 1054.982 kb on + strand, within torSat 1054.998 kb on - strand, within torSat 1055.245 kb on - strandat 1055.344 kb on - strandat 1055.389 kb on + strandat 1055.580 kb on - strandat 1055.580 kb on - strandat 1055.734 kb on + strand, within torTat 1055.817 kb on - strand, within torTat 1055.817 kb on - strand, within torTat 1055.833 kb on + strand, within torTat 1055.854 kb on - strand, within torTat 1055.972 kb on + strand, within torTat 1056.025 kb on + strand, within torTat 1056.136 kb on - strand, within torTat 1056.454 kb on + strandat 1056.454 kb on + strandat 1056.569 kb on + strand, within torRat 1056.600 kb on - strand, within torRat 1056.600 kb on - strand, within torRat 1056.672 kb on + strand, within torRat 1056.794 kb on + strand, within torRat 1056.951 kb on + strand, within torRat 1057.066 kb on + strand, within torRat 1057.074 kb on - strand, within torRat 1057.135 kb on + strandat 1057.135 kb on + strandat 1057.241 kb on - strandat 1057.335 kb on + strandat 1057.339 kb on - strandat 1057.429 kb on + strand, within torCat 1057.472 kb on - strand, within torCat 1057.472 kb on - strand, within torCat 1057.487 kb on + strand, within torCat 1057.487 kb on + strand, within torC

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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1,054,620 + torS b0993 0.72 -0.1
1,054,643 - torS b0993 0.72 +0.7
1,054,643 - torS b0993 0.72 -1.4
1,054,773 + torS b0993 0.77 -0.2
1,054,773 + torS b0993 0.77 -2.2
1,054,982 + torS b0993 0.85 +0.6
1,054,998 - torS b0993 0.85 +0.1
1,055,245 - +0.5
1,055,344 - +0.6
1,055,389 + +0.4
1,055,580 - -0.0
1,055,580 - -0.2
1,055,734 + torT b0994 0.24 -0.6
1,055,817 - torT b0994 0.32 -0.5
1,055,817 - torT b0994 0.32 +0.4
1,055,833 + torT b0994 0.34 -0.8
1,055,854 - torT b0994 0.36 -0.8
1,055,972 + torT b0994 0.47 -0.6
1,056,025 + torT b0994 0.53 -0.9
1,056,136 - torT b0994 0.63 -1.4
1,056,454 + -0.4
1,056,454 + -0.1
1,056,569 + torR b0995 0.12 +0.2
1,056,600 - torR b0995 0.17 -0.4
1,056,600 - torR b0995 0.17 +0.0
1,056,672 + torR b0995 0.27 -0.5
1,056,794 + torR b0995 0.45 -0.0
1,056,951 + torR b0995 0.67 +0.7
1,057,066 + torR b0995 0.84 -0.4
1,057,074 - torR b0995 0.85 +0.7
1,057,135 + +0.8
1,057,135 + +0.2
1,057,241 - -0.2
1,057,335 + +0.6
1,057,339 - +0.3
1,057,429 + torC b0996 0.10 +0.3
1,057,472 - torC b0996 0.14 +1.4
1,057,472 - torC b0996 0.14 -0.2
1,057,487 + torC b0996 0.15 -1.2
1,057,487 + torC b0996 0.15 -0.8

Or see this region's nucleotide sequence