Strain Fitness in Escherichia coli BW25113 around b1871

Experiment: Guanosine 0.35306 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyecN and yecO are separated by 40 nucleotidesyecO and yecP overlap by 4 nucleotidesyecP and bisZ are separated by 164 nucleotides b1869: yecN - orf, hypothetical protein (VIMSS), at 1,950,290 to 1,950,685 yecN b1870: yecO - predicted methyltransferase (NCBI), at 1,950,726 to 1,951,469 yecO b1871: yecP - predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI), at 1,951,466 to 1,952,437 yecP b1872: bisZ - biotin sulfoxide reductase 2 (VIMSS), at 1,952,602 to 1,955,031 bisZ Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -1 0 1 2at 1950.475 kb on + strand, within yecNat 1950.475 kb on + strand, within yecNat 1950.509 kb on + strand, within yecNat 1950.517 kb on - strand, within yecNat 1950.525 kb on + strand, within yecNat 1950.525 kb on + strand, within yecNat 1950.612 kb on + strand, within yecNat 1950.612 kb on + strand, within yecNat 1950.613 kb on - strand, within yecNat 1950.613 kb on - strand, within yecNat 1950.743 kb on + strandat 1951.029 kb on + strand, within yecOat 1951.519 kb on - strandat 1951.579 kb on + strand, within yecPat 1951.831 kb on - strand, within yecPat 1951.831 kb on - strand, within yecPat 1951.834 kb on + strand, within yecPat 1951.834 kb on + strand, within yecPat 1951.868 kb on + strand, within yecPat 1951.912 kb on + strand, within yecPat 1951.912 kb on + strand, within yecPat 1951.920 kb on + strand, within yecPat 1952.017 kb on - strand, within yecPat 1952.017 kb on - strand, within yecPat 1952.288 kb on - strand, within yecPat 1952.330 kb on - strand, within yecPat 1952.330 kb on - strand, within yecPat 1952.419 kb on + strandat 1952.530 kb on + strandat 1952.786 kb on + strandat 1952.794 kb on - strandat 1952.794 kb on - strandat 1952.972 kb on + strand, within bisZat 1952.986 kb on + strand, within bisZat 1953.062 kb on - strand, within bisZat 1953.078 kb on + strand, within bisZat 1953.208 kb on - strand, within bisZat 1953.262 kb on - strand, within bisZat 1953.262 kb on - strand, within bisZat 1953.262 kb on - strand, within bisZat 1953.270 kb on + strand, within bisZat 1953.298 kb on - strand, within bisZ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
remove
1,950,475 + yecN b1869 0.47 -0.2
1,950,475 + yecN b1869 0.47 +0.6
1,950,509 + yecN b1869 0.55 -0.8
1,950,517 - yecN b1869 0.57 +0.4
1,950,525 + yecN b1869 0.59 +0.4
1,950,525 + yecN b1869 0.59 -0.6
1,950,612 + yecN b1869 0.81 -0.2
1,950,612 + yecN b1869 0.81 +0.1
1,950,613 - yecN b1869 0.82 -0.4
1,950,613 - yecN b1869 0.82 +0.3
1,950,743 + -0.9
1,951,029 + yecO b1870 0.41 +0.5
1,951,519 - -0.5
1,951,579 + yecP b1871 0.12 +1.3
1,951,831 - yecP b1871 0.38 +0.6
1,951,831 - yecP b1871 0.38 +0.4
1,951,834 + yecP b1871 0.38 +0.4
1,951,834 + yecP b1871 0.38 -0.9
1,951,868 + yecP b1871 0.41 +0.0
1,951,912 + yecP b1871 0.46 -0.2
1,951,912 + yecP b1871 0.46 +2.0
1,951,920 + yecP b1871 0.47 +0.3
1,952,017 - yecP b1871 0.57 +0.3
1,952,017 - yecP b1871 0.57 -0.4
1,952,288 - yecP b1871 0.85 +1.6
1,952,330 - yecP b1871 0.89 +0.1
1,952,330 - yecP b1871 0.89 +1.0
1,952,419 + -0.3
1,952,530 + +0.5
1,952,786 + -0.9
1,952,794 - -0.1
1,952,794 - -1.5
1,952,972 + bisZ b1872 0.15 -0.4
1,952,986 + bisZ b1872 0.16 -1.0
1,953,062 - bisZ b1872 0.19 -0.7
1,953,078 + bisZ b1872 0.20 +0.1
1,953,208 - bisZ b1872 0.25 -0.4
1,953,262 - bisZ b1872 0.27 -0.2
1,953,262 - bisZ b1872 0.27 +0.2
1,953,262 - bisZ b1872 0.27 -0.6
1,953,270 + bisZ b1872 0.27 -0.2
1,953,298 - bisZ b1872 0.29 -0.9

Or see this region's nucleotide sequence