Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfiE and yfiK are separated by 102 nucleotides yfiK and yfiD are separated by 55 nucleotides yfiD and ung are separated by 304 nucleotides
b2577: yfiE - putative transcriptional regulator LYSR-type (VIMSS), at 2,712,461 to 2,713,342
yfiE
b2578: yfiK - neutral amino-acid efflux system (NCBI), at 2,713,445 to 2,714,032
yfiK
b2579: yfiD - pyruvate formate lyase subunit (NCBI), at 2,714,088 to 2,714,471
yfiD
b2580: ung - uracil-DNA glycosylase (NCBI), at 2,714,776 to 2,715,465
ung
Position (kb)
2714
2715 Strain fitness (log2 ratio)
-2
-1
0
1 at 2713.329 kb on - strand at 2713.412 kb on + strand at 2713.412 kb on + strand at 2713.500 kb on + strand at 2713.508 kb on - strand, within yfiK at 2713.508 kb on - strand, within yfiK at 2713.525 kb on + strand, within yfiK at 2713.525 kb on + strand, within yfiK at 2713.533 kb on + strand, within yfiK at 2713.663 kb on + strand, within yfiK at 2713.692 kb on - strand, within yfiK at 2713.761 kb on + strand, within yfiK at 2713.815 kb on + strand, within yfiK at 2713.815 kb on + strand, within yfiK at 2713.815 kb on + strand, within yfiK at 2713.815 kb on + strand, within yfiK at 2713.833 kb on + strand, within yfiK at 2713.833 kb on + strand, within yfiK at 2714.065 kb on - strand at 2714.072 kb on + strand at 2714.072 kb on + strand at 2714.093 kb on + strand at 2714.105 kb on + strand at 2714.129 kb on + strand, within yfiD at 2714.220 kb on + strand, within yfiD at 2714.220 kb on + strand, within yfiD at 2714.255 kb on + strand, within yfiD at 2714.430 kb on + strand, within yfiD at 2714.557 kb on - strand at 2714.557 kb on - strand at 2714.652 kb on - strand at 2714.777 kb on - strand at 2714.937 kb on - strand, within ung at 2714.940 kb on + strand, within ung at 2714.978 kb on + strand, within ung at 2715.050 kb on + strand, within ung at 2715.089 kb on + strand, within ung at 2715.121 kb on + strand, within ung at 2715.161 kb on + strand, within ung at 2715.195 kb on - strand, within ung at 2715.311 kb on + strand, within ung at 2715.451 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 2,713,329 - -0.7 2,713,412 + -0.3 2,713,412 + -0.6 2,713,500 + -1.0 2,713,508 - yfiK b2578 0.11 +0.1 2,713,508 - yfiK b2578 0.11 +0.6 2,713,525 + yfiK b2578 0.14 -0.2 2,713,525 + yfiK b2578 0.14 -0.0 2,713,533 + yfiK b2578 0.15 +0.3 2,713,663 + yfiK b2578 0.37 +0.3 2,713,692 - yfiK b2578 0.42 -1.5 2,713,761 + yfiK b2578 0.54 -0.0 2,713,815 + yfiK b2578 0.63 -0.4 2,713,815 + yfiK b2578 0.63 -0.1 2,713,815 + yfiK b2578 0.63 +0.2 2,713,815 + yfiK b2578 0.63 -0.4 2,713,833 + yfiK b2578 0.66 -0.6 2,713,833 + yfiK b2578 0.66 -0.8 2,714,065 - -0.3 2,714,072 + +0.6 2,714,072 + +0.2 2,714,093 + +0.5 2,714,105 + +0.5 2,714,129 + yfiD b2579 0.11 -2.5 2,714,220 + yfiD b2579 0.34 +0.7 2,714,220 + yfiD b2579 0.34 -0.6 2,714,255 + yfiD b2579 0.43 -0.5 2,714,430 + yfiD b2579 0.89 -1.5 2,714,557 - -0.6 2,714,557 - +0.5 2,714,652 - +0.0 2,714,777 - +0.4 2,714,937 - ung b2580 0.23 +0.4 2,714,940 + ung b2580 0.24 +0.3 2,714,978 + ung b2580 0.29 +0.3 2,715,050 + ung b2580 0.40 -0.0 2,715,089 + ung b2580 0.45 +0.0 2,715,121 + ung b2580 0.50 -0.4 2,715,161 + ung b2580 0.56 -0.2 2,715,195 - ung b2580 0.61 -0.3 2,715,311 + ung b2580 0.78 +0.3 2,715,451 + +0.7
Or see this region's nucleotide sequence