Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoF and nuoE overlap by 4 nucleotides nuoE and nuoC are separated by 2 nucleotides
b2284: nuoF - NADH:ubiquinone oxidoreductase, chain F (NCBI), at 2,398,240 to 2,399,577
nuoF
b2285: nuoE - NADH dehydrogenase subunit E (NCBI), at 2,399,574 to 2,400,074
nuoE
b2286: nuoC - NADH:ubiquinone oxidoreductase, chain C,D (RefSeq), at 2,400,077 to 2,401,867
nuoC
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2398.610 kb on + strand, within nuoF at 2398.770 kb on + strand, within nuoF at 2398.778 kb on + strand, within nuoF at 2398.795 kb on - strand, within nuoF at 2398.831 kb on - strand, within nuoF at 2398.874 kb on - strand, within nuoF at 2398.876 kb on + strand, within nuoF at 2398.883 kb on + strand, within nuoF at 2398.914 kb on + strand, within nuoF at 2398.914 kb on + strand at 2398.964 kb on + strand, within nuoF at 2398.964 kb on + strand, within nuoF at 2399.113 kb on - strand, within nuoF at 2399.283 kb on - strand, within nuoF at 2399.293 kb on - strand, within nuoF at 2399.314 kb on - strand, within nuoF at 2399.405 kb on - strand, within nuoF at 2399.405 kb on - strand, within nuoF at 2399.406 kb on - strand, within nuoF at 2399.461 kb on + strand at 2399.461 kb on + strand at 2399.508 kb on - strand at 2399.626 kb on + strand at 2399.626 kb on + strand, within nuoE at 2399.725 kb on + strand, within nuoE at 2399.863 kb on - strand, within nuoE at 2399.948 kb on - strand, within nuoE at 2399.972 kb on + strand, within nuoE at 2400.031 kb on - strand at 2400.113 kb on + strand at 2400.113 kb on + strand at 2400.221 kb on - strand at 2400.221 kb on - strand at 2400.254 kb on + strand at 2400.254 kb on - strand at 2400.327 kb on - strand, within nuoC at 2400.349 kb on - strand, within nuoC at 2400.357 kb on - strand, within nuoC at 2400.431 kb on + strand, within nuoC at 2400.565 kb on - strand, within nuoC at 2400.683 kb on - strand, within nuoC at 2400.683 kb on - strand, within nuoC at 2401.060 kb on + strand, within nuoC at 2401.073 kb on - strand, within nuoC at 2401.073 kb on - strand, within nuoC
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 2,398,610 + nuoF b2284 0.28 +0.6 2,398,770 + nuoF b2284 0.40 +0.4 2,398,778 + nuoF b2284 0.40 -1.5 2,398,795 - nuoF b2284 0.41 -2.4 2,398,831 - nuoF b2284 0.44 -0.0 2,398,874 - nuoF b2284 0.47 -0.2 2,398,876 + nuoF b2284 0.48 -0.4 2,398,883 + nuoF b2284 0.48 -0.7 2,398,914 + nuoF b2284 0.50 +1.6 2,398,914 + -0.4 2,398,964 + nuoF b2284 0.54 -0.4 2,398,964 + nuoF b2284 0.54 -1.5 2,399,113 - nuoF b2284 0.65 -1.8 2,399,283 - nuoF b2284 0.78 +1.3 2,399,293 - nuoF b2284 0.79 -0.2 2,399,314 - nuoF b2284 0.80 -1.2 2,399,405 - nuoF b2284 0.87 -1.5 2,399,405 - nuoF b2284 0.87 +0.9 2,399,406 - nuoF b2284 0.87 -1.4 2,399,461 + -1.1 2,399,461 + -1.4 2,399,508 - -1.4 2,399,626 + -0.4 2,399,626 + nuoE b2285 0.10 -1.1 2,399,725 + nuoE b2285 0.30 -1.0 2,399,863 - nuoE b2285 0.58 +2.0 2,399,948 - nuoE b2285 0.75 -0.4 2,399,972 + nuoE b2285 0.79 -0.9 2,400,031 - -1.9 2,400,113 + -0.4 2,400,113 + -1.1 2,400,221 - -1.3 2,400,221 - -0.4 2,400,254 + +0.1 2,400,254 - -1.7 2,400,327 - nuoC b2286 0.14 -0.8 2,400,349 - nuoC b2286 0.15 -1.5 2,400,357 - nuoC b2286 0.16 +0.2 2,400,431 + nuoC b2286 0.20 -2.4 2,400,565 - nuoC b2286 0.27 -1.5 2,400,683 - nuoC b2286 0.34 +0.4 2,400,683 - nuoC b2286 0.34 -2.5 2,401,060 + nuoC b2286 0.55 -2.0 2,401,073 - nuoC b2286 0.56 -0.6 2,401,073 - nuoC b2286 0.56 +0.1
Or see this region's nucleotide sequence