Strain Fitness in Escherichia coli BW25113 around b3146

Experiment: Adenosine 0.3742 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyraK and yraL are separated by 42 nucleotidesyraL and yraM are separated by 64 nucleotides b3145: yraK - predicted fimbrial-like adhesin protein (NCBI), at 3,289,363 to 3,290,454 yraK b3146: yraL - predicted methyltransferase (NCBI), at 3,290,497 to 3,291,357 yraL b3147: yraM - hypothetical protein (NCBI), at 3,291,422 to 3,293,458 yraM Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -2 -1 0 1 2at 3289.497 kb on + strand, within yraKat 3289.525 kb on + strand, within yraKat 3289.553 kb on - strand, within yraKat 3289.553 kb on - strand, within yraKat 3289.567 kb on + strand, within yraKat 3289.619 kb on - strand, within yraKat 3289.619 kb on - strand, within yraKat 3289.624 kb on - strand, within yraKat 3289.624 kb on - strand, within yraKat 3289.637 kb on + strand, within yraKat 3289.707 kb on + strand, within yraKat 3289.707 kb on + strand, within yraKat 3289.716 kb on - strand, within yraKat 3289.716 kb on - strand, within yraKat 3289.719 kb on - strand, within yraKat 3289.721 kb on - strand, within yraKat 3289.722 kb on - strand, within yraKat 3289.784 kb on - strand, within yraKat 3289.784 kb on - strand, within yraKat 3289.788 kb on + strand, within yraKat 3289.788 kb on + strand, within yraKat 3289.807 kb on - strand, within yraKat 3289.833 kb on + strand, within yraKat 3289.843 kb on + strand, within yraKat 3289.864 kb on - strand, within yraKat 3289.864 kb on - strand, within yraKat 3289.866 kb on + strand, within yraKat 3289.874 kb on - strand, within yraKat 3289.874 kb on - strand, within yraKat 3289.874 kb on - strand, within yraKat 3289.874 kb on - strand, within yraKat 3289.947 kb on + strand, within yraKat 3290.014 kb on + strand, within yraKat 3290.015 kb on + strand, within yraKat 3290.015 kb on + strand, within yraKat 3290.023 kb on - strand, within yraKat 3290.023 kb on - strand, within yraKat 3290.023 kb on - strand, within yraKat 3290.078 kb on - strand, within yraKat 3290.078 kb on - strand, within yraKat 3290.096 kb on + strand, within yraKat 3290.103 kb on - strand, within yraKat 3290.204 kb on - strand, within yraKat 3290.218 kb on + strand, within yraKat 3290.220 kb on + strand, within yraKat 3290.220 kb on + strand, within yraKat 3290.245 kb on + strand, within yraKat 3290.246 kb on + strand, within yraKat 3290.246 kb on + strand, within yraKat 3290.352 kb on - strandat 3290.352 kb on - strandat 3290.378 kb on + strandat 3290.401 kb on - strandat 3290.436 kb on - strandat 3290.527 kb on - strandat 3290.529 kb on - strandat 3290.594 kb on + strand, within yraLat 3290.746 kb on - strand, within yraLat 3290.746 kb on - strand, within yraLat 3290.774 kb on - strand, within yraLat 3290.774 kb on - strand, within yraLat 3290.781 kb on - strand, within yraLat 3290.826 kb on - strand, within yraLat 3290.827 kb on + strand, within yraLat 3290.827 kb on + strand, within yraLat 3290.835 kb on - strand, within yraLat 3290.849 kb on - strand, within yraLat 3290.849 kb on - strand, within yraLat 3290.872 kb on - strand, within yraLat 3290.872 kb on - strand, within yraLat 3290.985 kb on - strand, within yraLat 3290.992 kb on + strand, within yraLat 3291.039 kb on + strand, within yraLat 3291.039 kb on + strand, within yraLat 3291.051 kb on + strand, within yraLat 3291.061 kb on + strand, within yraLat 3291.109 kb on + strand, within yraLat 3291.118 kb on - strand, within yraLat 3291.165 kb on - strand, within yraLat 3291.212 kb on + strand, within yraLat 3291.361 kb on + strandat 3291.426 kb on - strandat 3291.464 kb on + strandat 3291.464 kb on + strandat 3291.521 kb on - strandat 3291.521 kb on - strandat 3291.523 kb on + strandat 3291.523 kb on + strandat 3291.530 kb on + strandat 3291.530 kb on + strandat 3291.530 kb on + strandat 3291.548 kb on + strandat 3291.601 kb on + strandat 3291.601 kb on + strandat 3291.684 kb on - strand, within yraMat 3291.703 kb on - strand, within yraMat 3291.707 kb on + strand, within yraMat 3291.713 kb on - strand, within yraMat 3291.713 kb on - strand, within yraMat 3291.720 kb on + strand, within yraMat 3291.720 kb on + strand, within yraMat 3291.749 kb on - strand, within yraMat 3291.750 kb on - strand, within yraMat 3291.838 kb on - strand, within yraMat 3291.949 kb on + strand, within yraMat 3291.949 kb on + strand, within yraMat 3291.985 kb on + strand, within yraMat 3291.985 kb on + strand, within yraMat 3292.008 kb on - strand, within yraMat 3292.071 kb on + strand, within yraMat 3292.071 kb on - strand, within yraMat 3292.071 kb on - strand, within yraMat 3292.133 kb on - strand, within yraMat 3292.133 kb on - strand, within yraMat 3292.227 kb on - strand, within yraMat 3292.232 kb on + strand, within yraMat 3292.237 kb on - strand, within yraMat 3292.304 kb on - strand, within yraMat 3292.316 kb on - strand, within yraMat 3292.316 kb on - strand, within yraM

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine 0.3742 mM (C)
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3,289,497 + yraK b3145 0.12 -0.1
3,289,525 + yraK b3145 0.15 -0.3
3,289,553 - yraK b3145 0.17 +1.0
3,289,553 - yraK b3145 0.17 -0.7
3,289,567 + yraK b3145 0.19 -0.9
3,289,619 - yraK b3145 0.23 +0.3
3,289,619 - yraK b3145 0.23 -0.0
3,289,624 - yraK b3145 0.24 +0.8
3,289,624 - yraK b3145 0.24 -0.2
3,289,637 + yraK b3145 0.25 +0.1
3,289,707 + yraK b3145 0.32 -0.3
3,289,707 + yraK b3145 0.32 +0.6
3,289,716 - yraK b3145 0.32 +0.9
3,289,716 - yraK b3145 0.32 +1.7
3,289,719 - yraK b3145 0.33 -0.3
3,289,721 - yraK b3145 0.33 -0.8
3,289,722 - yraK b3145 0.33 +0.2
3,289,784 - yraK b3145 0.39 -0.7
3,289,784 - yraK b3145 0.39 -0.6
3,289,788 + yraK b3145 0.39 +0.4
3,289,788 + yraK b3145 0.39 -0.4
3,289,807 - yraK b3145 0.41 +0.5
3,289,833 + yraK b3145 0.43 -0.9
3,289,843 + yraK b3145 0.44 -0.1
3,289,864 - yraK b3145 0.46 -0.4
3,289,864 - yraK b3145 0.46 -0.2
3,289,866 + yraK b3145 0.46 -0.1
3,289,874 - yraK b3145 0.47 +0.6
3,289,874 - yraK b3145 0.47 -0.8
3,289,874 - yraK b3145 0.47 +0.1
3,289,874 - yraK b3145 0.47 +0.7
3,289,947 + yraK b3145 0.53 -1.3
3,290,014 + yraK b3145 0.60 +0.1
3,290,015 + yraK b3145 0.60 +0.1
3,290,015 + yraK b3145 0.60 -0.5
3,290,023 - yraK b3145 0.60 +0.2
3,290,023 - yraK b3145 0.60 +0.7
3,290,023 - yraK b3145 0.60 +0.4
3,290,078 - yraK b3145 0.65 +0.0
3,290,078 - yraK b3145 0.65 +0.7
3,290,096 + yraK b3145 0.67 +0.1
3,290,103 - yraK b3145 0.68 -0.4
3,290,204 - yraK b3145 0.77 +0.6
3,290,218 + yraK b3145 0.78 +0.4
3,290,220 + yraK b3145 0.78 -1.3
3,290,220 + yraK b3145 0.78 +0.7
3,290,245 + yraK b3145 0.81 -0.5
3,290,246 + yraK b3145 0.81 -0.6
3,290,246 + yraK b3145 0.81 -0.2
3,290,352 - +0.5
3,290,352 - -0.2
3,290,378 + -0.7
3,290,401 - +0.5
3,290,436 - -0.0
3,290,527 - -1.1
3,290,529 - +0.3
3,290,594 + yraL b3146 0.11 -0.3
3,290,746 - yraL b3146 0.29 +0.9
3,290,746 - yraL b3146 0.29 -0.1
3,290,774 - yraL b3146 0.32 +0.8
3,290,774 - yraL b3146 0.32 -1.0
3,290,781 - yraL b3146 0.33 +0.3
3,290,826 - yraL b3146 0.38 +0.2
3,290,827 + yraL b3146 0.38 +1.9
3,290,827 + yraL b3146 0.38 -0.8
3,290,835 - yraL b3146 0.39 +0.3
3,290,849 - yraL b3146 0.41 -0.0
3,290,849 - yraL b3146 0.41 +0.4
3,290,872 - yraL b3146 0.44 +0.4
3,290,872 - yraL b3146 0.44 +1.0
3,290,985 - yraL b3146 0.57 -0.8
3,290,992 + yraL b3146 0.57 +0.1
3,291,039 + yraL b3146 0.63 -2.0
3,291,039 + yraL b3146 0.63 +1.0
3,291,051 + yraL b3146 0.64 +0.4
3,291,061 + yraL b3146 0.66 +1.0
3,291,109 + yraL b3146 0.71 +0.8
3,291,118 - yraL b3146 0.72 +0.3
3,291,165 - yraL b3146 0.78 +0.4
3,291,212 + yraL b3146 0.83 -0.6
3,291,361 + -0.4
3,291,426 - -0.3
3,291,464 + +0.6
3,291,464 + +0.2
3,291,521 - +0.6
3,291,521 - -0.0
3,291,523 + -0.1
3,291,523 + -0.6
3,291,530 + -1.2
3,291,530 + -0.3
3,291,530 + +0.4
3,291,548 + -0.2
3,291,601 + -0.1
3,291,601 + -0.1
3,291,684 - yraM b3147 0.13 -0.1
3,291,703 - yraM b3147 0.14 +0.1
3,291,707 + yraM b3147 0.14 +0.3
3,291,713 - yraM b3147 0.14 +0.5
3,291,713 - yraM b3147 0.14 -0.4
3,291,720 + yraM b3147 0.15 +0.4
3,291,720 + yraM b3147 0.15 -0.0
3,291,749 - yraM b3147 0.16 -0.0
3,291,750 - yraM b3147 0.16 -0.8
3,291,838 - yraM b3147 0.20 +0.6
3,291,949 + yraM b3147 0.26 +0.1
3,291,949 + yraM b3147 0.26 -0.1
3,291,985 + yraM b3147 0.28 +1.1
3,291,985 + yraM b3147 0.28 +0.6
3,292,008 - yraM b3147 0.29 -0.7
3,292,071 + yraM b3147 0.32 +0.1
3,292,071 - yraM b3147 0.32 +0.3
3,292,071 - yraM b3147 0.32 -0.3
3,292,133 - yraM b3147 0.35 -0.2
3,292,133 - yraM b3147 0.35 -0.0
3,292,227 - yraM b3147 0.40 -0.9
3,292,232 + yraM b3147 0.40 +0.1
3,292,237 - yraM b3147 0.40 -0.6
3,292,304 - yraM b3147 0.43 +0.3
3,292,316 - yraM b3147 0.44 -0.3
3,292,316 - yraM b3147 0.44 -0.2

Or see this region's nucleotide sequence