Strain Fitness in Escherichia coli BW25113 around b2964

Experiment: Adenosine 0.3742 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmltC and nupG are separated by 201 nucleotidesnupG and speC are separated by 49 nucleotides b2963: mltC - membrane-bound lytic murein transglycosylase C (VIMSS), at 3,102,455 to 3,103,534 mltC b2964: nupG - transport of nucleosides, permease protein (VIMSS), at 3,103,736 to 3,104,992 nupG b2965: speC - ornithine decarboxylase isozyme (VIMSS), at 3,105,042 to 3,107,177 speC Position (kb) 3103 3104 3105Strain fitness (log2 ratio) -3 -2 -1 0 1at 3102.737 kb on - strand, within mltCat 3102.737 kb on - strand, within mltCat 3102.789 kb on + strand, within mltCat 3102.816 kb on - strand, within mltCat 3102.858 kb on + strand, within mltCat 3102.868 kb on + strand, within mltCat 3102.960 kb on - strand, within mltCat 3102.964 kb on + strand, within mltCat 3102.964 kb on + strand, within mltCat 3102.973 kb on + strand, within mltCat 3102.974 kb on - strand, within mltCat 3102.974 kb on - strand, within mltCat 3102.985 kb on + strand, within mltCat 3102.985 kb on + strand, within mltCat 3102.992 kb on - strand, within mltCat 3102.995 kb on - strand, within mltCat 3103.017 kb on - strand, within mltCat 3103.024 kb on + strand, within mltCat 3103.118 kb on - strand, within mltCat 3103.165 kb on + strand, within mltCat 3103.175 kb on + strand, within mltCat 3103.176 kb on - strand, within mltCat 3103.187 kb on - strand, within mltCat 3103.187 kb on - strand, within mltCat 3103.283 kb on - strand, within mltCat 3103.314 kb on + strand, within mltCat 3103.506 kb on - strandat 3103.506 kb on - strandat 3103.777 kb on - strandat 3103.805 kb on + strandat 3103.830 kb on - strandat 3103.830 kb on - strandat 3103.862 kb on + strand, within nupGat 3103.862 kb on + strand, within nupGat 3103.891 kb on + strand, within nupGat 3103.938 kb on - strand, within nupGat 3103.965 kb on - strand, within nupGat 3103.984 kb on + strand, within nupGat 3103.999 kb on + strand, within nupGat 3104.007 kb on - strand, within nupGat 3104.061 kb on + strand, within nupGat 3104.082 kb on + strand, within nupGat 3104.091 kb on - strand, within nupGat 3104.152 kb on - strand, within nupGat 3104.152 kb on - strand, within nupGat 3104.172 kb on - strand, within nupGat 3104.179 kb on - strand, within nupGat 3104.179 kb on - strand, within nupGat 3104.211 kb on + strand, within nupGat 3104.211 kb on + strand, within nupGat 3104.232 kb on - strand, within nupGat 3104.232 kb on - strand, within nupGat 3104.234 kb on + strand, within nupGat 3104.234 kb on + strand, within nupGat 3104.321 kb on + strand, within nupGat 3104.326 kb on - strand, within nupGat 3104.443 kb on - strand, within nupGat 3104.541 kb on + strand, within nupGat 3104.603 kb on - strand, within nupGat 3104.650 kb on + strand, within nupGat 3104.655 kb on + strand, within nupGat 3104.663 kb on - strand, within nupGat 3104.692 kb on - strand, within nupGat 3104.697 kb on - strand, within nupGat 3104.697 kb on - strand, within nupGat 3104.707 kb on - strand, within nupGat 3104.813 kb on - strand, within nupGat 3104.911 kb on + strandat 3104.911 kb on + strandat 3104.912 kb on + strandat 3104.912 kb on + strandat 3104.912 kb on + strandat 3104.915 kb on - strandat 3105.094 kb on + strandat 3105.173 kb on - strandat 3105.200 kb on - strandat 3105.287 kb on - strand, within speCat 3105.322 kb on - strand, within speCat 3105.322 kb on - strand, within speCat 3105.396 kb on - strand, within speCat 3105.400 kb on - strand, within speCat 3105.430 kb on + strand, within speCat 3105.430 kb on + strand, within speCat 3105.436 kb on - strand, within speCat 3105.636 kb on - strand, within speCat 3105.646 kb on + strand, within speCat 3105.647 kb on - strand, within speCat 3105.705 kb on + strand, within speCat 3105.730 kb on + strand, within speCat 3105.730 kb on + strand, within speCat 3105.746 kb on + strand, within speCat 3105.746 kb on + strand, within speCat 3105.888 kb on - strand, within speCat 3105.911 kb on + strand, within speCat 3105.926 kb on - strand, within speCat 3105.929 kb on - strand, within speCat 3105.929 kb on - strand, within speCat 3105.945 kb on - strand, within speC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine 0.3742 mM (C)
remove
3,102,737 - mltC b2963 0.26 +0.2
3,102,737 - mltC b2963 0.26 -0.7
3,102,789 + mltC b2963 0.31 -0.4
3,102,816 - mltC b2963 0.33 +0.0
3,102,858 + mltC b2963 0.37 +0.5
3,102,868 + mltC b2963 0.38 +0.8
3,102,960 - mltC b2963 0.47 +0.2
3,102,964 + mltC b2963 0.47 +0.2
3,102,964 + mltC b2963 0.47 +0.6
3,102,973 + mltC b2963 0.48 -0.9
3,102,974 - mltC b2963 0.48 +0.0
3,102,974 - mltC b2963 0.48 -0.4
3,102,985 + mltC b2963 0.49 -1.2
3,102,985 + mltC b2963 0.49 +0.7
3,102,992 - mltC b2963 0.50 -0.5
3,102,995 - mltC b2963 0.50 +0.0
3,103,017 - mltC b2963 0.52 -0.1
3,103,024 + mltC b2963 0.53 -0.2
3,103,118 - mltC b2963 0.61 -0.5
3,103,165 + mltC b2963 0.66 -0.4
3,103,175 + mltC b2963 0.67 +0.1
3,103,176 - mltC b2963 0.67 -0.3
3,103,187 - mltC b2963 0.68 -0.1
3,103,187 - mltC b2963 0.68 +1.1
3,103,283 - mltC b2963 0.77 -0.4
3,103,314 + mltC b2963 0.80 +0.3
3,103,506 - +0.0
3,103,506 - -0.2
3,103,777 - -0.9
3,103,805 + -1.2
3,103,830 - -0.3
3,103,830 - -0.8
3,103,862 + nupG b2964 0.10 -0.7
3,103,862 + nupG b2964 0.10 -1.1
3,103,891 + nupG b2964 0.12 -0.7
3,103,938 - nupG b2964 0.16 -0.8
3,103,965 - nupG b2964 0.18 -1.2
3,103,984 + nupG b2964 0.20 -1.3
3,103,999 + nupG b2964 0.21 -1.1
3,104,007 - nupG b2964 0.22 -0.5
3,104,061 + nupG b2964 0.26 -0.5
3,104,082 + nupG b2964 0.28 -0.1
3,104,091 - nupG b2964 0.28 -1.4
3,104,152 - nupG b2964 0.33 -1.4
3,104,152 - nupG b2964 0.33 -2.3
3,104,172 - nupG b2964 0.35 -1.2
3,104,179 - nupG b2964 0.35 -0.5
3,104,179 - nupG b2964 0.35 -0.4
3,104,211 + nupG b2964 0.38 -2.0
3,104,211 + nupG b2964 0.38 -0.6
3,104,232 - nupG b2964 0.39 -3.2
3,104,232 - nupG b2964 0.39 -0.3
3,104,234 + nupG b2964 0.40 -1.0
3,104,234 + nupG b2964 0.40 -1.6
3,104,321 + nupG b2964 0.47 -2.4
3,104,326 - nupG b2964 0.47 -1.1
3,104,443 - nupG b2964 0.56 +0.8
3,104,541 + nupG b2964 0.64 -0.9
3,104,603 - nupG b2964 0.69 -1.0
3,104,650 + nupG b2964 0.73 -1.0
3,104,655 + nupG b2964 0.73 -0.9
3,104,663 - nupG b2964 0.74 -0.9
3,104,692 - nupG b2964 0.76 +0.1
3,104,697 - nupG b2964 0.76 -1.4
3,104,697 - nupG b2964 0.76 -0.8
3,104,707 - nupG b2964 0.77 -1.2
3,104,813 - nupG b2964 0.86 -1.6
3,104,911 + -1.3
3,104,911 + -0.9
3,104,912 + -1.1
3,104,912 + -0.9
3,104,912 + -0.8
3,104,915 - -1.7
3,105,094 + -0.1
3,105,173 - +0.5
3,105,200 - -0.2
3,105,287 - speC b2965 0.11 -0.1
3,105,322 - speC b2965 0.13 +0.5
3,105,322 - speC b2965 0.13 -0.3
3,105,396 - speC b2965 0.17 +0.6
3,105,400 - speC b2965 0.17 -0.1
3,105,430 + speC b2965 0.18 -0.4
3,105,430 + speC b2965 0.18 +0.7
3,105,436 - speC b2965 0.18 -0.4
3,105,636 - speC b2965 0.28 +0.4
3,105,646 + speC b2965 0.28 +0.8
3,105,647 - speC b2965 0.28 +0.6
3,105,705 + speC b2965 0.31 +0.7
3,105,730 + speC b2965 0.32 -0.5
3,105,730 + speC b2965 0.32 -0.0
3,105,746 + speC b2965 0.33 +0.2
3,105,746 + speC b2965 0.33 -0.4
3,105,888 - speC b2965 0.40 +0.1
3,105,911 + speC b2965 0.41 -0.5
3,105,926 - speC b2965 0.41 -0.9
3,105,929 - speC b2965 0.42 -0.4
3,105,929 - speC b2965 0.42 +0.5
3,105,945 - speC b2965 0.42 -0.5

Or see this region's nucleotide sequence