Strain Fitness in Escherichia coli BW25113 around b2428

Experiment: Adenosine 0.3742 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfeT and yfeU are separated by 163 nucleotidesyfeU and murP are separated by 3 nucleotides b2427: yfeT - predicted DNA-binding transcriptional regulator (NCBI), at 2,542,774 to 2,543,631 yfeT b2428: yfeU - N-acetylmuramic acid-6-phosphate etherase (NCBI), at 2,543,795 to 2,544,691 yfeU b2429: murP - N-acetylmuramic acid phosphotransfer permease (NCBI), at 2,544,695 to 2,546,119 murP Position (kb) 2543 2544 2545Strain fitness (log2 ratio) -2 -1 0 1at 2542.796 kb on - strandat 2542.833 kb on - strandat 2542.833 kb on - strandat 2543.173 kb on - strand, within yfeTat 2543.193 kb on - strand, within yfeTat 2543.230 kb on - strand, within yfeTat 2543.231 kb on + strand, within yfeTat 2543.231 kb on + strand, within yfeTat 2543.365 kb on + strand, within yfeTat 2543.365 kb on + strand, within yfeTat 2543.376 kb on + strand, within yfeTat 2543.410 kb on + strand, within yfeTat 2543.428 kb on - strand, within yfeTat 2543.648 kb on - strandat 2543.683 kb on + strandat 2543.880 kb on - strandat 2543.935 kb on - strand, within yfeUat 2544.000 kb on + strand, within yfeUat 2544.058 kb on - strand, within yfeUat 2544.130 kb on - strand, within yfeUat 2544.130 kb on - strand, within yfeUat 2544.390 kb on - strand, within yfeUat 2544.425 kb on + strand, within yfeUat 2544.425 kb on + strand, within yfeUat 2544.686 kb on + strandat 2544.693 kb on - strandat 2544.704 kb on - strandat 2544.717 kb on - strandat 2544.727 kb on + strandat 2544.801 kb on + strandat 2544.801 kb on + strandat 2544.811 kb on - strandat 2544.811 kb on - strandat 2544.964 kb on - strand, within murPat 2545.000 kb on - strand, within murPat 2545.234 kb on - strand, within murPat 2545.234 kb on - strand, within murPat 2545.234 kb on - strand, within murPat 2545.236 kb on - strand, within murPat 2545.306 kb on - strand, within murPat 2545.347 kb on + strand, within murPat 2545.445 kb on - strand, within murPat 2545.471 kb on - strand, within murPat 2545.471 kb on - strand, within murPat 2545.494 kb on - strand, within murPat 2545.494 kb on - strand, within murPat 2545.559 kb on + strand, within murPat 2545.559 kb on + strand, within murPat 2545.620 kb on + strand, within murPat 2545.637 kb on + strand, within murP

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine 0.3742 mM (C)
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2,542,796 - -0.4
2,542,833 - -0.3
2,542,833 - -0.3
2,543,173 - yfeT b2427 0.47 +0.0
2,543,193 - yfeT b2427 0.49 -0.9
2,543,230 - yfeT b2427 0.53 +0.1
2,543,231 + yfeT b2427 0.53 +0.4
2,543,231 + yfeT b2427 0.53 -0.1
2,543,365 + yfeT b2427 0.69 -0.4
2,543,365 + yfeT b2427 0.69 -1.0
2,543,376 + yfeT b2427 0.70 -0.1
2,543,410 + yfeT b2427 0.74 +0.3
2,543,428 - yfeT b2427 0.76 +0.0
2,543,648 - -0.2
2,543,683 + -0.0
2,543,880 - +0.1
2,543,935 - yfeU b2428 0.16 -1.1
2,544,000 + yfeU b2428 0.23 +0.4
2,544,058 - yfeU b2428 0.29 -0.7
2,544,130 - yfeU b2428 0.37 -0.8
2,544,130 - yfeU b2428 0.37 -2.1
2,544,390 - yfeU b2428 0.66 +0.4
2,544,425 + yfeU b2428 0.70 -1.5
2,544,425 + yfeU b2428 0.70 -0.7
2,544,686 + -0.5
2,544,693 - -0.0
2,544,704 - +0.1
2,544,717 - -0.4
2,544,727 + -0.3
2,544,801 + +0.1
2,544,801 + -0.6
2,544,811 - +1.6
2,544,811 - +0.6
2,544,964 - murP b2429 0.19 +0.6
2,545,000 - murP b2429 0.21 -0.2
2,545,234 - murP b2429 0.38 +0.1
2,545,234 - murP b2429 0.38 -0.6
2,545,234 - murP b2429 0.38 +0.4
2,545,236 - murP b2429 0.38 -0.2
2,545,306 - murP b2429 0.43 -0.5
2,545,347 + murP b2429 0.46 -0.2
2,545,445 - murP b2429 0.53 -0.4
2,545,471 - murP b2429 0.54 -1.5
2,545,471 - murP b2429 0.54 -0.9
2,545,494 - murP b2429 0.56 +0.2
2,545,494 - murP b2429 0.56 +0.5
2,545,559 + murP b2429 0.61 -0.5
2,545,559 + murP b2429 0.61 +0.3
2,545,620 + murP b2429 0.65 +0.2
2,545,637 + murP b2429 0.66 -0.4

Or see this region's nucleotide sequence