Strain Fitness in Escherichia coli BW25113 around b1662

Experiment: Adenosine 0.3742 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcfa and ribC are separated by 39 nucleotidesribC and mdtK are separated by 214 nucleotides b1661: cfa - cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI), at 1,739,437 to 1,740,585 cfa b1662: ribC - riboflavin synthase subunit alpha (NCBI), at 1,740,625 to 1,741,266 ribC b1663: mdtK - multidrug efflux protein NorM (NCBI), at 1,741,481 to 1,742,854 mdtK Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -2 -1 0 1 2at 1739.797 kb on + strand, within cfaat 1740.198 kb on - strand, within cfaat 1740.226 kb on - strand, within cfaat 1740.389 kb on + strand, within cfaat 1740.447 kb on + strand, within cfaat 1740.447 kb on + strand, within cfaat 1740.449 kb on + strand, within cfaat 1740.449 kb on + strand, within cfaat 1740.505 kb on - strandat 1740.538 kb on + strandat 1741.305 kb on + strandat 1741.305 kb on + strandat 1741.328 kb on - strandat 1741.333 kb on - strandat 1741.342 kb on + strandat 1741.736 kb on - strand, within mdtKat 1741.736 kb on - strand, within mdtKat 1741.798 kb on + strand, within mdtKat 1741.798 kb on + strand, within mdtKat 1741.928 kb on - strand, within mdtKat 1742.088 kb on - strand, within mdtKat 1742.235 kb on + strand, within mdtKat 1742.237 kb on + strand, within mdtKat 1742.253 kb on - strand, within mdtK

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine 0.3742 mM (C)
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1,739,797 + cfa b1661 0.31 -0.6
1,740,198 - cfa b1661 0.66 +2.0
1,740,226 - cfa b1661 0.69 -0.5
1,740,389 + cfa b1661 0.83 +0.1
1,740,447 + cfa b1661 0.88 +0.0
1,740,447 + cfa b1661 0.88 -1.2
1,740,449 + cfa b1661 0.88 -0.2
1,740,449 + cfa b1661 0.88 +0.0
1,740,505 - -0.3
1,740,538 + +0.2
1,741,305 + -0.3
1,741,305 + -1.9
1,741,328 - -0.2
1,741,333 - -0.7
1,741,342 + +0.0
1,741,736 - mdtK b1663 0.19 +0.9
1,741,736 - mdtK b1663 0.19 +0.1
1,741,798 + mdtK b1663 0.23 +1.3
1,741,798 + mdtK b1663 0.23 +1.3
1,741,928 - mdtK b1663 0.33 +1.0
1,742,088 - mdtK b1663 0.44 +0.9
1,742,235 + mdtK b1663 0.55 +1.3
1,742,237 + mdtK b1663 0.55 +0.7
1,742,253 - mdtK b1663 0.56 +1.0

Or see this region's nucleotide sequence