Strain Fitness in Escherichia coli BW25113 around b4230

Experiment: TP4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP4
4,449,705	+	ytfR	b4485	0.42	-0.5
4,449,718	-	ytfR	b4485	0.42	+0.2
4,449,953	+	ytfR	b4485	0.58	+0.6
4,449,953	+	ytfR	b4485	0.58	-0.1
4,450,019	+	ytfR	b4485	0.62	-0.1
4,450,080	+	ytfR	b4485	0.66	+0.6
4,450,088	-	ytfR	b4485	0.67	-2.8
4,450,167	+	ytfR	b4485	0.72	-0.0
4,450,175	-	ytfR	b4485	0.73	-1.0
4,450,267	-	ytfR	b4485	0.79	+0.9
4,450,268	-	ytfR	b4485	0.79	+0.5
4,450,406	-	ytfR	b4485	0.88	+0.4
4,450,406	-	ytfR	b4485	0.88	-0.5
4,450,451	-				-0.4
4,450,478	+				-2.3
4,450,478	+				+1.0
4,450,592	+				-1.5
4,450,666	-				+0.1
4,450,668	-				+1.5
4,450,675	-				-1.2
4,450,702	-	ytfT	b4230	0.11	-0.1
4,450,708	-	ytfT	b4230	0.11	-0.6
4,450,716	-	ytfT	b4230	0.12	-0.3
4,450,755	-	ytfT	b4230	0.16	-2.6
4,450,755	-	ytfT	b4230	0.16	-2.3
4,450,760	-	ytfT	b4230	0.16	-1.3
4,450,765	-	ytfT	b4230	0.17	+0.7
4,450,765	-	ytfT	b4230	0.17	-0.3
4,450,826	-	ytfT	b4230	0.23	-3.1
4,450,832	+	ytfT	b4230	0.23	+0.9
4,450,843	-	ytfT	b4230	0.24	+0.4
4,450,853	-	ytfT	b4230	0.25	+0.4
4,450,858	+	ytfT	b4230	0.26	-0.2
4,450,865	-	ytfT	b4230	0.26	-0.4
4,450,865	-	ytfT	b4230	0.26	-1.3
4,451,166	+	ytfT	b4230	0.56	-3.1
4,451,218	+	ytfT	b4230	0.61	-0.7
4,451,218	+	ytfT	b4230	0.61	-0.9
4,451,226	-	ytfT	b4230	0.62	+0.1
4,451,287	-	ytfT	b4230	0.68	-0.1
4,451,298	+	ytfT	b4230	0.69	-0.4
4,451,302	-	ytfT	b4230	0.69	-0.4
4,451,302	-	ytfT	b4230	0.69	-0.8
4,451,360	+	ytfT	b4230	0.75	-0.5
4,451,473	+	ytfT	b4230	0.86	-1.0
4,451,586	+				-1.9
4,451,586	+				+1.3
4,451,598	+				+0.8
4,451,598	+				-0.6
4,451,606	-				-1.9
4,451,646	+				-1.6
4,451,775	+	yjfF	b4231	0.17	-2.9
4,451,775	+	yjfF	b4231	0.17	-1.2
4,451,791	-	yjfF	b4231	0.19	+0.5
4,451,830	-	yjfF	b4231	0.22	+0.9
4,451,830	-	yjfF	b4231	0.22	+0.6
4,451,944	-	yjfF	b4231	0.34	+0.8
4,452,005	-	yjfF	b4231	0.40	+2.0
4,452,005	-	yjfF	b4231	0.40	-0.5
4,452,046	-	yjfF	b4231	0.44	-0.3
4,452,046	-	yjfF	b4231	0.44	-1.8
4,452,131	+	yjfF	b4231	0.53	+1.0
4,452,132	+	yjfF	b4231	0.53	+0.0
4,452,169	+	yjfF	b4231	0.57	-0.6
4,452,169	+	yjfF	b4231	0.57	-0.1
4,452,187	-	yjfF	b4231	0.58	-1.3
4,452,307	-	yjfF	b4231	0.70	+3.1
4,452,398	+	yjfF	b4231	0.80	+1.1
4,452,406	-	yjfF	b4231	0.80	+0.7
4,452,406	-	yjfF	b4231	0.80	-2.1
4,452,442	+	yjfF	b4231	0.84	+0.7
4,452,471	+	yjfF	b4231	0.87	+0.4
4,452,555	-				-2.4