Strain Fitness in Escherichia coli BW25113 around b2457

Experiment: TP4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nteutE and cchB are separated by 11 nucleotidescchB and cchA are separated by 106 nucleotidescchA and eutI are separated by 38 nucleotides b2455: eutE - predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI), at 2,568,370 to 2,569,773 eutE b2456: cchB - predicted carboxysome structural protein, ethanolamine utilization protein (NCBI), at 2,569,785 to 2,570,072 cchB b2457: cchA - detox protein (VIMSS), at 2,570,179 to 2,570,472 cchA b2458: eutI - predicted phosphotransacetylase subunit (NCBI), at 2,570,511 to 2,571,527 eutI Position (kb) 2570 2571Strain fitness (log2 ratio) -2 -1 0 1at 2569.252 kb on - strand, within eutEat 2569.252 kb on - strand, within eutEat 2569.362 kb on + strand, within eutEat 2569.362 kb on + strand, within eutEat 2569.464 kb on - strand, within eutEat 2569.734 kb on + strandat 2569.820 kb on + strand, within cchBat 2569.837 kb on + strand, within cchBat 2569.849 kb on - strand, within cchBat 2569.849 kb on - strand, within cchBat 2570.117 kb on - strandat 2570.168 kb on + strandat 2570.168 kb on + strandat 2570.261 kb on - strand, within cchAat 2570.318 kb on - strand, within cchAat 2570.350 kb on + strand, within cchAat 2570.353 kb on - strand, within cchAat 2570.353 kb on - strand, within cchAat 2570.368 kb on - strand, within cchAat 2570.435 kb on + strand, within cchAat 2570.435 kb on + strand, within cchAat 2570.490 kb on - strandat 2570.502 kb on - strandat 2570.654 kb on - strand, within eutIat 2570.989 kb on + strand, within eutIat 2570.989 kb on + strand, within eutIat 2571.039 kb on + strand, within eutIat 2571.065 kb on - strand, within eutIat 2571.148 kb on + strand, within eutIat 2571.148 kb on + strand, within eutIat 2571.330 kb on - strand, within eutIat 2571.337 kb on - strand, within eutIat 2571.337 kb on - strand, within eutIat 2571.441 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP4
remove
2,569,252 - eutE b2455 0.63 +1.5
2,569,252 - eutE b2455 0.63 -1.1
2,569,362 + eutE b2455 0.71 -2.2
2,569,362 + eutE b2455 0.71 -0.4
2,569,464 - eutE b2455 0.78 -0.3
2,569,734 + -1.3
2,569,820 + cchB b2456 0.12 +0.2
2,569,837 + cchB b2456 0.18 +0.1
2,569,849 - cchB b2456 0.22 -0.7
2,569,849 - cchB b2456 0.22 -0.7
2,570,117 - -0.6
2,570,168 + -1.4
2,570,168 + -0.3
2,570,261 - cchA b2457 0.28 -0.4
2,570,318 - cchA b2457 0.47 -1.5
2,570,350 + cchA b2457 0.58 -2.0
2,570,353 - cchA b2457 0.59 -0.1
2,570,353 - cchA b2457 0.59 -0.8
2,570,368 - cchA b2457 0.64 -1.0
2,570,435 + cchA b2457 0.87 +0.7
2,570,435 + cchA b2457 0.87 +0.7
2,570,490 - +0.5
2,570,502 - +0.5
2,570,654 - eutI b2458 0.14 -0.2
2,570,989 + eutI b2458 0.47 +1.2
2,570,989 + eutI b2458 0.47 -1.9
2,571,039 + eutI b2458 0.52 -0.2
2,571,065 - eutI b2458 0.54 -0.2
2,571,148 + eutI b2458 0.63 +1.6
2,571,148 + eutI b2458 0.63 +0.0
2,571,330 - eutI b2458 0.81 -1.9
2,571,337 - eutI b2458 0.81 -0.8
2,571,337 - eutI b2458 0.81 +0.1
2,571,441 + -0.3

Or see this region's nucleotide sequence