Experiment: TP4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pfkB and ydiZ are separated by 100 nucleotides ydiZ and yniA are separated by 105 nucleotides
b1723: pfkB - 6-phosphofructokinase II; suppressor of pfkA (VIMSS), at 1,804,394 to 1,805,323
pfkB
b1724: ydiZ - hypothetical protein (NCBI), at 1,805,424 to 1,805,714
ydiZ
b1725: yniA - predicted phosphotransferase/kinase (NCBI), at 1,805,820 to 1,806,680
yniA
Position (kb)
1805
1806 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1804.490 kb on - strand, within pfkB at 1804.501 kb on - strand, within pfkB at 1804.635 kb on + strand, within pfkB at 1804.635 kb on + strand, within pfkB at 1804.785 kb on + strand, within pfkB at 1804.911 kb on + strand, within pfkB at 1804.911 kb on + strand, within pfkB at 1804.911 kb on + strand, within pfkB at 1805.063 kb on + strand, within pfkB at 1805.063 kb on + strand, within pfkB at 1805.077 kb on - strand, within pfkB at 1805.136 kb on - strand, within pfkB at 1805.145 kb on + strand, within pfkB at 1805.355 kb on + strand at 1805.471 kb on - strand, within ydiZ at 1805.648 kb on - strand, within ydiZ at 1805.853 kb on + strand at 1805.863 kb on - strand at 1805.863 kb on - strand at 1805.980 kb on - strand, within yniA at 1806.165 kb on - strand, within yniA at 1806.217 kb on - strand, within yniA at 1806.333 kb on + strand, within yniA at 1806.412 kb on + strand, within yniA at 1806.412 kb on + strand, within yniA at 1806.430 kb on - strand, within yniA at 1806.458 kb on + strand, within yniA at 1806.458 kb on + strand, within yniA at 1806.464 kb on + strand, within yniA at 1806.563 kb on + strand, within yniA at 1806.563 kb on + strand, within yniA at 1806.573 kb on + strand, within yniA at 1806.593 kb on - strand, within yniA at 1806.593 kb on - strand, within yniA at 1806.598 kb on - strand at 1806.599 kb on - strand at 1806.599 kb on - strand at 1806.665 kb on + strand at 1806.684 kb on + strand at 1806.684 kb on + strand at 1806.686 kb on - strand at 1806.686 kb on - strand at 1806.687 kb on - strand at 1806.697 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP4 remove 1,804,490 - pfkB b1723 0.10 -0.7 1,804,501 - pfkB b1723 0.12 -0.8 1,804,635 + pfkB b1723 0.26 -0.1 1,804,635 + pfkB b1723 0.26 -2.3 1,804,785 + pfkB b1723 0.42 +0.6 1,804,911 + pfkB b1723 0.56 +1.2 1,804,911 + pfkB b1723 0.56 +0.6 1,804,911 + pfkB b1723 0.56 -0.4 1,805,063 + pfkB b1723 0.72 -0.8 1,805,063 + pfkB b1723 0.72 +1.2 1,805,077 - pfkB b1723 0.73 +0.6 1,805,136 - pfkB b1723 0.80 -0.6 1,805,145 + pfkB b1723 0.81 -0.6 1,805,355 + -1.8 1,805,471 - ydiZ b1724 0.16 -2.0 1,805,648 - ydiZ b1724 0.77 -1.3 1,805,853 + +1.8 1,805,863 - +0.8 1,805,863 - +0.5 1,805,980 - yniA b1725 0.19 -2.4 1,806,165 - yniA b1725 0.40 +1.7 1,806,217 - yniA b1725 0.46 -1.0 1,806,333 + yniA b1725 0.60 +0.2 1,806,412 + yniA b1725 0.69 -1.4 1,806,412 + yniA b1725 0.69 +2.0 1,806,430 - yniA b1725 0.71 -1.0 1,806,458 + yniA b1725 0.74 -0.5 1,806,458 + yniA b1725 0.74 -0.6 1,806,464 + yniA b1725 0.75 -1.9 1,806,563 + yniA b1725 0.86 -1.7 1,806,563 + yniA b1725 0.86 -1.2 1,806,573 + yniA b1725 0.87 +0.5 1,806,593 - yniA b1725 0.90 +1.5 1,806,593 - yniA b1725 0.90 +1.5 1,806,598 - +0.8 1,806,599 - -1.2 1,806,599 - -0.4 1,806,665 + -2.2 1,806,684 + -0.3 1,806,684 + -1.4 1,806,686 - +0.4 1,806,686 - +0.6 1,806,687 - -0.2 1,806,697 + -2.0
Or see this region's nucleotide sequence