Experiment: TP4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdO and dsbG are separated by 208 nucleotides dsbG and ahpC are separated by 371 nucleotides
b0603: ybdO - predicted DNA-binding transcriptional regulator (NCBI), at 635,939 to 636,841
ybdO
b0604: dsbG - thiol:disulfide interchange protein (VIMSS), at 637,050 to 637,796
dsbG
b0605: ahpC - alkyl hydroperoxide reductase, C22 subunit (NCBI), at 638,168 to 638,731
ahpC
Position (kb) 637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 636.350 kb on - strand, within ybdO at 636.360 kb on - strand, within ybdO at 636.500 kb on + strand, within ybdO at 636.942 kb on - strand at 636.947 kb on - strand at 636.947 kb on - strand at 636.976 kb on - strand at 636.976 kb on - strand at 636.976 kb on - strand at 636.976 kb on - strand at 636.976 kb on - strand at 636.976 kb on - strand at 636.976 kb on - strand at 637.021 kb on - strand at 637.029 kb on - strand at 637.032 kb on - strand at 637.032 kb on - strand at 637.097 kb on - strand at 637.097 kb on - strand at 637.102 kb on - strand at 637.102 kb on - strand at 637.102 kb on - strand at 637.102 kb on - strand at 637.103 kb on - strand at 637.103 kb on - strand at 637.103 kb on - strand at 637.109 kb on - strand at 637.109 kb on - strand at 637.110 kb on - strand at 637.113 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.114 kb on - strand at 637.137 kb on - strand, within dsbG at 637.137 kb on - strand, within dsbG at 637.137 kb on - strand, within dsbG at 637.150 kb on - strand, within dsbG at 637.185 kb on + strand, within dsbG at 637.204 kb on - strand, within dsbG at 637.204 kb on - strand, within dsbG at 637.217 kb on + strand, within dsbG at 637.237 kb on - strand, within dsbG at 637.237 kb on - strand, within dsbG at 637.244 kb on + strand, within dsbG at 637.498 kb on - strand, within dsbG at 637.836 kb on + strand at 637.944 kb on + strand at 637.944 kb on + strand at 637.969 kb on + strand at 638.144 kb on + strand at 638.144 kb on + strand at 638.315 kb on + strand, within ahpC at 638.376 kb on - strand, within ahpC at 638.378 kb on + strand, within ahpC at 638.489 kb on - strand, within ahpC at 638.513 kb on + strand, within ahpC at 638.513 kb on + strand, within ahpC at 638.557 kb on + strand, within ahpC at 638.557 kb on + strand, within ahpC at 638.557 kb on + strand, within ahpC at 638.625 kb on + strand, within ahpC at 638.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP4 remove 636,350 - ybdO b0603 0.46 +2.9 636,360 - ybdO b0603 0.47 +2.9 636,500 + ybdO b0603 0.62 +2.9 636,942 - +1.4 636,947 - -0.5 636,947 - +0.4 636,976 - +2.9 636,976 - +0.4 636,976 - +1.4 636,976 - +0.9 636,976 - +0.4 636,976 - +2.9 636,976 - +0.9 637,021 - -1.0 637,029 - -1.4 637,032 - +1.3 637,032 - +0.1 637,097 - -0.6 637,097 - +0.3 637,102 - -2.0 637,102 - -2.4 637,102 - -0.5 637,102 - -2.0 637,103 - -2.3 637,103 - +0.8 637,103 - -1.3 637,109 - +0.2 637,109 - +0.7 637,110 - -1.4 637,113 - -0.7 637,114 - -0.8 637,114 - -1.7 637,114 - +0.7 637,114 - +0.9 637,114 - -2.2 637,114 - -0.5 637,114 - +0.0 637,114 - -0.9 637,137 - dsbG b0604 0.12 -1.8 637,137 - dsbG b0604 0.12 -0.4 637,137 - dsbG b0604 0.12 +0.0 637,150 - dsbG b0604 0.13 -0.2 637,185 + dsbG b0604 0.18 -1.1 637,204 - dsbG b0604 0.21 -3.2 637,204 - dsbG b0604 0.21 -2.9 637,217 + dsbG b0604 0.22 -0.1 637,237 - dsbG b0604 0.25 -0.7 637,237 - dsbG b0604 0.25 -2.1 637,244 + dsbG b0604 0.26 -1.1 637,498 - dsbG b0604 0.60 -0.8 637,836 + -0.5 637,944 + -1.6 637,944 + +0.2 637,969 + -0.2 638,144 + -0.9 638,144 + +0.7 638,315 + ahpC b0605 0.26 +1.8 638,376 - ahpC b0605 0.37 -0.6 638,378 + ahpC b0605 0.37 +1.2 638,489 - ahpC b0605 0.57 +0.9 638,513 + ahpC b0605 0.61 -1.4 638,513 + ahpC b0605 0.61 -1.1 638,557 + ahpC b0605 0.69 -0.6 638,557 + ahpC b0605 0.69 +1.4 638,557 + ahpC b0605 0.69 +1.6 638,625 + ahpC b0605 0.81 +0.9 638,692 + -0.8
Or see this region's nucleotide sequence