Experiment: TP4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgE and ykgF are separated by 10 nucleotides ykgF and ykgG overlap by 8 nucleotides ykgG and ykgH are separated by 242 nucleotides
b0306: ykgE - predicted oxidoreductase (NCBI), at 320,832 to 321,551
ykgE
b0307: ykgF - predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain (NCBI), at 321,562 to 322,989
ykgF
b0308: ykgG - putative transporter (VIMSS), at 322,982 to 323,677
ykgG
b0310: ykgH - predicted inner membrane protein (NCBI), at 323,920 to 324,588
ykgH
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 320.576 kb on - strand at 320.654 kb on - strand at 320.723 kb on + strand at 320.728 kb on + strand at 320.729 kb on + strand at 320.729 kb on - strand at 320.731 kb on - strand at 320.781 kb on - strand at 320.788 kb on - strand at 320.788 kb on - strand at 320.807 kb on + strand at 320.813 kb on + strand at 320.815 kb on - strand at 320.821 kb on - strand at 320.865 kb on - strand at 320.883 kb on - strand at 320.884 kb on - strand at 320.886 kb on + strand at 320.886 kb on + strand at 320.894 kb on + strand at 320.894 kb on + strand at 320.898 kb on + strand at 320.898 kb on + strand at 320.899 kb on - strand at 320.901 kb on - strand at 320.904 kb on - strand, within ykgE at 320.944 kb on + strand, within ykgE at 320.944 kb on + strand, within ykgE at 320.959 kb on + strand, within ykgE at 320.959 kb on + strand, within ykgE at 320.971 kb on - strand, within ykgE at 320.975 kb on - strand, within ykgE at 320.975 kb on - strand, within ykgE at 320.977 kb on - strand, within ykgE at 320.978 kb on - strand, within ykgE at 320.983 kb on + strand, within ykgE at 321.022 kb on + strand, within ykgE at 321.027 kb on + strand, within ykgE at 321.027 kb on + strand, within ykgE at 321.035 kb on - strand, within ykgE at 321.065 kb on + strand, within ykgE at 321.073 kb on - strand, within ykgE at 321.106 kb on - strand, within ykgE at 321.202 kb on - strand, within ykgE at 321.221 kb on - strand, within ykgE at 321.221 kb on - strand, within ykgE at 321.236 kb on - strand, within ykgE at 321.236 kb on - strand, within ykgE at 321.249 kb on - strand, within ykgE at 321.266 kb on + strand, within ykgE at 321.307 kb on + strand, within ykgE at 321.321 kb on + strand, within ykgE at 321.325 kb on + strand, within ykgE at 321.325 kb on + strand, within ykgE at 321.335 kb on + strand, within ykgE at 321.436 kb on - strand, within ykgE at 321.461 kb on + strand, within ykgE at 321.461 kb on + strand, within ykgE at 321.533 kb on + strand at 321.533 kb on + strand at 321.552 kb on + strand at 321.553 kb on + strand at 321.557 kb on + strand at 321.672 kb on - strand at 321.699 kb on + strand at 321.732 kb on + strand, within ykgF at 321.732 kb on + strand, within ykgF at 321.736 kb on + strand, within ykgF at 321.750 kb on + strand, within ykgF at 321.918 kb on + strand, within ykgF at 321.960 kb on + strand, within ykgF at 321.960 kb on + strand, within ykgF at 322.013 kb on + strand, within ykgF at 322.028 kb on + strand, within ykgF at 322.028 kb on + strand, within ykgF at 322.034 kb on + strand, within ykgF at 322.075 kb on + strand, within ykgF at 322.081 kb on + strand, within ykgF at 322.154 kb on + strand, within ykgF at 322.239 kb on + strand, within ykgF at 322.477 kb on - strand, within ykgF at 322.516 kb on + strand, within ykgF at 322.516 kb on + strand, within ykgF at 322.560 kb on - strand, within ykgF at 322.641 kb on + strand, within ykgF at 322.660 kb on + strand, within ykgF at 323.074 kb on + strand, within ykgG at 323.074 kb on + strand, within ykgG at 323.094 kb on + strand, within ykgG at 323.105 kb on + strand, within ykgG at 323.168 kb on + strand, within ykgG at 323.237 kb on + strand, within ykgG at 323.307 kb on - strand, within ykgG at 323.346 kb on - strand, within ykgG at 323.346 kb on - strand, within ykgG at 323.359 kb on + strand, within ykgG at 323.359 kb on + strand, within ykgG at 323.500 kb on + strand, within ykgG at 323.503 kb on + strand, within ykgG at 323.503 kb on - strand, within ykgG at 323.583 kb on - strand, within ykgG at 323.612 kb on - strand at 323.614 kb on + strand at 323.614 kb on + strand at 323.621 kb on - strand at 323.623 kb on + strand at 323.623 kb on + strand at 323.623 kb on + strand at 323.628 kb on + strand at 323.628 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.651 kb on + strand at 323.690 kb on + strand at 323.696 kb on + strand at 323.698 kb on - strand at 323.701 kb on + strand at 323.701 kb on + strand at 323.712 kb on + strand at 323.712 kb on + strand at 323.712 kb on + strand at 323.712 kb on + strand at 323.742 kb on + strand at 323.748 kb on + strand at 323.748 kb on + strand at 323.748 kb on + strand at 323.749 kb on + strand at 323.757 kb on + strand at 323.757 kb on + strand at 323.759 kb on + strand at 323.759 kb on + strand at 323.759 kb on + strand at 323.874 kb on + strand at 323.874 kb on + strand at 323.889 kb on + strand at 323.892 kb on - strand at 323.892 kb on - strand at 323.892 kb on - strand at 323.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP4 remove 320,576 - +3.0 320,654 - +0.3 320,723 + -0.5 320,728 + -1.2 320,729 + -1.1 320,729 - +1.0 320,731 - +3.0 320,781 - -1.5 320,788 - -2.1 320,788 - +0.9 320,807 + +0.6 320,813 + -0.1 320,815 - -1.9 320,821 - +0.1 320,865 - -1.7 320,883 - +0.6 320,884 - -1.7 320,886 + +1.3 320,886 + +0.6 320,894 + -0.7 320,894 + -1.3 320,898 + -0.1 320,898 + +1.0 320,899 - +0.8 320,901 - -0.7 320,904 - ykgE b0306 0.10 -1.7 320,944 + ykgE b0306 0.16 -0.5 320,944 + ykgE b0306 0.16 -1.4 320,959 + ykgE b0306 0.18 +0.6 320,959 + ykgE b0306 0.18 +1.1 320,971 - ykgE b0306 0.19 -2.7 320,975 - ykgE b0306 0.20 -0.4 320,975 - ykgE b0306 0.20 -2.0 320,977 - ykgE b0306 0.20 +3.0 320,978 - ykgE b0306 0.20 +0.1 320,983 + ykgE b0306 0.21 -0.6 321,022 + ykgE b0306 0.26 +0.4 321,027 + ykgE b0306 0.27 +0.8 321,027 + ykgE b0306 0.27 +0.8 321,035 - ykgE b0306 0.28 -1.1 321,065 + ykgE b0306 0.32 -1.5 321,073 - ykgE b0306 0.33 +2.2 321,106 - ykgE b0306 0.38 -0.3 321,202 - ykgE b0306 0.51 -0.5 321,221 - ykgE b0306 0.54 -2.4 321,221 - ykgE b0306 0.54 -1.2 321,236 - ykgE b0306 0.56 -0.7 321,236 - ykgE b0306 0.56 -1.0 321,249 - ykgE b0306 0.58 -0.8 321,266 + ykgE b0306 0.60 -1.0 321,307 + ykgE b0306 0.66 -0.3 321,321 + ykgE b0306 0.68 +0.6 321,325 + ykgE b0306 0.68 -1.7 321,325 + ykgE b0306 0.68 -2.9 321,335 + ykgE b0306 0.70 -0.4 321,436 - ykgE b0306 0.84 +0.5 321,461 + ykgE b0306 0.87 +0.5 321,461 + ykgE b0306 0.87 -0.7 321,533 + -2.2 321,533 + -1.9 321,552 + -0.3 321,553 + +0.6 321,557 + -0.6 321,672 - -0.4 321,699 + +2.8 321,732 + ykgF b0307 0.12 -2.3 321,732 + ykgF b0307 0.12 -1.4 321,736 + ykgF b0307 0.12 -1.8 321,750 + ykgF b0307 0.13 -0.6 321,918 + ykgF b0307 0.25 +0.7 321,960 + ykgF b0307 0.28 -1.9 321,960 + ykgF b0307 0.28 +0.2 322,013 + ykgF b0307 0.32 -2.8 322,028 + ykgF b0307 0.33 -1.8 322,028 + ykgF b0307 0.33 +1.2 322,034 + ykgF b0307 0.33 -1.0 322,075 + ykgF b0307 0.36 -1.0 322,081 + ykgF b0307 0.36 -0.5 322,154 + ykgF b0307 0.41 +0.1 322,239 + ykgF b0307 0.47 +0.9 322,477 - ykgF b0307 0.64 -1.9 322,516 + ykgF b0307 0.67 -1.8 322,516 + ykgF b0307 0.67 -1.4 322,560 - ykgF b0307 0.70 +1.5 322,641 + ykgF b0307 0.76 -1.4 322,660 + ykgF b0307 0.77 +0.9 323,074 + ykgG b0308 0.13 -0.6 323,074 + ykgG b0308 0.13 -2.0 323,094 + ykgG b0308 0.16 -0.6 323,105 + ykgG b0308 0.18 +0.5 323,168 + ykgG b0308 0.27 +0.1 323,237 + ykgG b0308 0.37 +0.5 323,307 - ykgG b0308 0.47 +2.0 323,346 - ykgG b0308 0.52 +1.4 323,346 - ykgG b0308 0.52 +2.6 323,359 + ykgG b0308 0.54 -0.9 323,359 + ykgG b0308 0.54 -3.1 323,500 + ykgG b0308 0.74 -0.8 323,503 + ykgG b0308 0.75 -2.3 323,503 - ykgG b0308 0.75 +2.0 323,583 - ykgG b0308 0.86 -0.6 323,612 - +2.0 323,614 + -0.1 323,614 + +0.7 323,621 - -0.6 323,623 + -0.5 323,623 + -0.2 323,623 + +0.9 323,628 + +0.6 323,628 + +1.2 323,630 + -1.1 323,630 + +0.7 323,630 + -0.1 323,630 + +0.2 323,630 + -0.4 323,630 + +0.8 323,630 + -3.1 323,651 + -0.3 323,690 + -0.2 323,696 + +1.2 323,698 - +3.0 323,701 + -0.4 323,701 + -0.1 323,712 + -0.7 323,712 + -0.4 323,712 + -0.5 323,712 + -1.1 323,742 + +0.3 323,748 + -2.2 323,748 + -0.4 323,748 + -2.5 323,749 + +0.4 323,757 + +0.1 323,757 + -2.7 323,759 + +1.7 323,759 + +0.4 323,759 + -0.0 323,874 + +0.4 323,874 + +2.0 323,889 + +1.0 323,892 - +3.0 323,892 - +2.0 323,892 - +3.0 323,892 - +2.0
Or see this region's nucleotide sequence