Strain Fitness in Escherichia coli BW25113 around b4463

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygcS and ygcU are separated by 93 nucleotidesygcU and ygcW are separated by 69 nucleotides b2771: ygcS - putative transport protein (VIMSS), at 2,894,555 to 2,895,892 ygcS b4463: ygcU - predicted FAD containing dehydrogenase (NCBI), at 2,895,986 to 2,897,440 ygcU b2774: ygcW - putative oxidoreductase (VIMSS), at 2,897,510 to 2,898,295 ygcW Position (kb) 2895 2896 2897 2898Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2894.999 kb on - strand, within ygcSat 2895.130 kb on - strand, within ygcSat 2895.187 kb on + strand, within ygcSat 2895.187 kb on + strand, within ygcSat 2895.442 kb on - strand, within ygcSat 2895.535 kb on - strand, within ygcSat 2895.559 kb on + strand, within ygcSat 2895.692 kb on - strand, within ygcSat 2895.721 kb on + strand, within ygcSat 2895.770 kb on + strandat 2895.803 kb on + strandat 2895.906 kb on - strandat 2896.019 kb on - strandat 2896.053 kb on + strandat 2896.053 kb on + strandat 2896.084 kb on - strandat 2896.170 kb on + strand, within ygcUat 2896.305 kb on - strand, within ygcUat 2896.357 kb on - strand, within ygcUat 2896.357 kb on - strand, within ygcUat 2896.423 kb on + strand, within ygcUat 2896.423 kb on + strand, within ygcUat 2896.531 kb on - strand, within ygcUat 2896.652 kb on - strand, within ygcUat 2896.732 kb on - strand, within ygcUat 2896.825 kb on - strand, within ygcUat 2896.905 kb on - strand, within ygcUat 2896.905 kb on - strand, within ygcUat 2896.944 kb on + strand, within ygcUat 2896.944 kb on + strand, within ygcUat 2896.954 kb on - strand, within ygcUat 2897.059 kb on - strand, within ygcUat 2897.070 kb on + strand, within ygcUat 2897.078 kb on - strand, within ygcUat 2897.078 kb on - strand, within ygcUat 2897.156 kb on + strand, within ygcUat 2897.156 kb on + strand, within ygcUat 2897.164 kb on - strand, within ygcUat 2897.211 kb on - strand, within ygcUat 2897.219 kb on - strand, within ygcUat 2897.219 kb on - strand, within ygcUat 2897.259 kb on - strand, within ygcUat 2897.354 kb on + strandat 2897.364 kb on + strandat 2897.364 kb on + strandat 2897.582 kb on + strandat 2897.582 kb on + strandat 2897.582 kb on + strandat 2897.582 kb on + strandat 2897.768 kb on - strand, within ygcWat 2897.768 kb on - strand, within ygcWat 2897.777 kb on - strand, within ygcWat 2897.813 kb on - strand, within ygcWat 2897.813 kb on - strand, within ygcWat 2897.899 kb on - strand, within ygcWat 2897.928 kb on - strand, within ygcWat 2897.946 kb on - strand, within ygcWat 2897.955 kb on - strand, within ygcWat 2897.975 kb on - strand, within ygcWat 2897.985 kb on - strand, within ygcWat 2898.013 kb on - strand, within ygcWat 2898.013 kb on - strand, within ygcWat 2898.023 kb on - strand, within ygcWat 2898.026 kb on + strand, within ygcWat 2898.069 kb on - strand, within ygcWat 2898.071 kb on + strand, within ygcWat 2898.072 kb on + strand, within ygcWat 2898.072 kb on + strand, within ygcWat 2898.090 kb on - strand, within ygcWat 2898.090 kb on - strand, within ygcWat 2898.174 kb on + strand, within ygcWat 2898.185 kb on + strand, within ygcWat 2898.191 kb on + strand, within ygcWat 2898.197 kb on + strand, within ygcWat 2898.200 kb on - strand, within ygcWat 2898.272 kb on + strandat 2898.291 kb on + strandat 2898.292 kb on + strandat 2898.292 kb on + strandat 2898.292 kb on + strandat 2898.292 kb on + strandat 2898.365 kb on - strandat 2898.384 kb on - strandat 2898.384 kb on - strandat 2898.402 kb on - strandat 2898.402 kb on - strandat 2898.413 kb on + strandat 2898.424 kb on + strandat 2898.430 kb on + strandat 2898.432 kb on - strandat 2898.434 kb on + strandat 2898.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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2,894,999 - ygcS b2771 0.33 +1.8
2,895,130 - ygcS b2771 0.43 -3.3
2,895,187 + ygcS b2771 0.47 +1.5
2,895,187 + ygcS b2771 0.47 -1.9
2,895,442 - ygcS b2771 0.66 +1.5
2,895,535 - ygcS b2771 0.73 +1.5
2,895,559 + ygcS b2771 0.75 +1.5
2,895,692 - ygcS b2771 0.85 +1.9
2,895,721 + ygcS b2771 0.87 +1.0
2,895,770 + -3.0
2,895,803 + +1.5
2,895,906 - -1.5
2,896,019 - +0.2
2,896,053 + -0.5
2,896,053 + +4.8
2,896,084 - -1.9
2,896,170 + ygcU b4463 0.13 +1.6
2,896,305 - ygcU b4463 0.22 -1.5
2,896,357 - ygcU b4463 0.25 -0.8
2,896,357 - ygcU b4463 0.25 -0.6
2,896,423 + ygcU b4463 0.30 -1.9
2,896,423 + ygcU b4463 0.30 -0.3
2,896,531 - ygcU b4463 0.37 -3.4
2,896,652 - ygcU b4463 0.46 -0.8
2,896,732 - ygcU b4463 0.51 -0.5
2,896,825 - ygcU b4463 0.58 +1.5
2,896,905 - ygcU b4463 0.63 +1.2
2,896,905 - ygcU b4463 0.63 -0.9
2,896,944 + ygcU b4463 0.66 -2.9
2,896,944 + ygcU b4463 0.66 -0.5
2,896,954 - ygcU b4463 0.67 +1.7
2,897,059 - ygcU b4463 0.74 +1.3
2,897,070 + ygcU b4463 0.75 -2.3
2,897,078 - ygcU b4463 0.75 -1.9
2,897,078 - ygcU b4463 0.75 -2.9
2,897,156 + ygcU b4463 0.80 +1.5
2,897,156 + ygcU b4463 0.80 +3.0
2,897,164 - ygcU b4463 0.81 +3.1
2,897,211 - ygcU b4463 0.84 -1.3
2,897,219 - ygcU b4463 0.85 +1.1
2,897,219 - ygcU b4463 0.85 +3.0
2,897,259 - ygcU b4463 0.87 -0.5
2,897,354 + -0.5
2,897,364 + -0.1
2,897,364 + +0.5
2,897,582 + -0.1
2,897,582 + +1.5
2,897,582 + +1.5
2,897,582 + +1.5
2,897,768 - ygcW b2774 0.33 +1.5
2,897,768 - ygcW b2774 0.33 +1.8
2,897,777 - ygcW b2774 0.34 +2.5
2,897,813 - ygcW b2774 0.39 +1.5
2,897,813 - ygcW b2774 0.39 -0.1
2,897,899 - ygcW b2774 0.49 +0.5
2,897,928 - ygcW b2774 0.53 -0.9
2,897,946 - ygcW b2774 0.55 +1.5
2,897,955 - ygcW b2774 0.57 +1.5
2,897,975 - ygcW b2774 0.59 -0.1
2,897,985 - ygcW b2774 0.60 +0.5
2,898,013 - ygcW b2774 0.64 +4.2
2,898,013 - ygcW b2774 0.64 +1.5
2,898,023 - ygcW b2774 0.65 +0.9
2,898,026 + ygcW b2774 0.66 -0.1
2,898,069 - ygcW b2774 0.71 +1.5
2,898,071 + ygcW b2774 0.71 -0.1
2,898,072 + ygcW b2774 0.72 +1.5
2,898,072 + ygcW b2774 0.72 +1.5
2,898,090 - ygcW b2774 0.74 +0.5
2,898,090 - ygcW b2774 0.74 +1.5
2,898,174 + ygcW b2774 0.84 -3.1
2,898,185 + ygcW b2774 0.86 +0.9
2,898,191 + ygcW b2774 0.87 -0.5
2,898,197 + ygcW b2774 0.87 +1.1
2,898,200 - ygcW b2774 0.88 +1.5
2,898,272 + -0.3
2,898,291 + -1.5
2,898,292 + -1.5
2,898,292 + -1.5
2,898,292 + +1.2
2,898,292 + +3.4
2,898,365 - -1.3
2,898,384 - +1.4
2,898,384 - -3.2
2,898,402 - -3.2
2,898,402 - -0.1
2,898,413 + -0.1
2,898,424 + -0.1
2,898,430 + -0.5
2,898,432 - +0.5
2,898,434 + -1.3
2,898,434 + +1.5

Or see this region's nucleotide sequence