Strain Fitness in Escherichia coli BW25113 around b4364

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaT and yjjB are separated by 106 nucleotidesyjjB and yjjP overlap by 10 nucleotidesyjjP and yjjQ are separated by 618 nucleotides b4362: dnaT - primosomal protein I (NCBI), at 4,599,001 to 4,599,540 dnaT b4363: yjjB - conserved inner membrane protein (RefSeq), at 4,599,647 to 4,600,120 yjjB b4364: yjjP - putative structural protein (VIMSS), at 4,600,111 to 4,600,881 yjjP b4365: yjjQ - predicted DNA-binding transcriptional regulator (NCBI), at 4,601,500 to 4,602,225 yjjQ Position (kb) 4600 4601Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 4599.536 kb on + strandat 4599.561 kb on - strandat 4599.589 kb on + strandat 4599.593 kb on + strandat 4599.609 kb on - strandat 4599.609 kb on - strandat 4599.609 kb on - strandat 4599.619 kb on + strandat 4599.681 kb on - strandat 4599.761 kb on - strand, within yjjBat 4599.761 kb on - strand, within yjjBat 4599.831 kb on + strand, within yjjBat 4599.837 kb on - strand, within yjjBat 4599.873 kb on + strand, within yjjBat 4599.873 kb on + strand, within yjjBat 4599.874 kb on + strand, within yjjBat 4599.874 kb on + strand, within yjjBat 4599.941 kb on + strand, within yjjBat 4600.053 kb on - strand, within yjjBat 4600.138 kb on - strandat 4600.198 kb on + strand, within yjjPat 4600.208 kb on - strand, within yjjPat 4600.211 kb on + strand, within yjjPat 4600.219 kb on - strand, within yjjPat 4600.219 kb on - strand, within yjjPat 4600.273 kb on + strand, within yjjPat 4600.273 kb on + strand, within yjjPat 4600.455 kb on + strand, within yjjPat 4600.485 kb on - strand, within yjjPat 4600.485 kb on - strand, within yjjPat 4600.538 kb on + strand, within yjjPat 4600.538 kb on + strand, within yjjPat 4600.588 kb on + strand, within yjjPat 4600.595 kb on + strand, within yjjPat 4600.613 kb on + strand, within yjjPat 4600.621 kb on + strand, within yjjPat 4600.629 kb on - strand, within yjjPat 4600.629 kb on - strand, within yjjPat 4600.629 kb on - strand, within yjjPat 4600.680 kb on + strand, within yjjPat 4600.694 kb on - strand, within yjjPat 4600.716 kb on + strand, within yjjPat 4600.730 kb on - strand, within yjjPat 4600.750 kb on + strand, within yjjPat 4600.750 kb on + strand, within yjjPat 4600.756 kb on - strand, within yjjPat 4600.757 kb on + strand, within yjjPat 4600.757 kb on - strand, within yjjPat 4600.758 kb on - strand, within yjjPat 4600.781 kb on - strand, within yjjPat 4600.781 kb on - strand, within yjjPat 4600.785 kb on + strand, within yjjPat 4600.804 kb on + strand, within yjjPat 4600.841 kb on + strandat 4600.843 kb on + strandat 4600.853 kb on - strandat 4600.853 kb on - strandat 4600.859 kb on + strandat 4600.859 kb on + strandat 4600.867 kb on - strandat 4600.874 kb on + strandat 4600.874 kb on + strandat 4600.876 kb on - strandat 4600.878 kb on + strandat 4600.882 kb on + strandat 4600.882 kb on - strandat 4600.888 kb on + strandat 4600.888 kb on + strandat 4600.890 kb on + strandat 4600.894 kb on + strandat 4600.894 kb on + strandat 4600.895 kb on + strandat 4600.895 kb on + strandat 4600.902 kb on - strandat 4600.902 kb on - strandat 4600.902 kb on - strandat 4600.928 kb on - strandat 4600.943 kb on - strandat 4600.951 kb on + strandat 4600.956 kb on + strandat 4600.956 kb on + strandat 4600.968 kb on + strandat 4600.988 kb on + strandat 4601.002 kb on + strandat 4601.002 kb on + strandat 4601.006 kb on + strandat 4601.006 kb on + strandat 4601.049 kb on + strandat 4601.049 kb on + strandat 4601.053 kb on + strandat 4601.053 kb on + strandat 4601.063 kb on + strandat 4601.349 kb on + strandat 4601.371 kb on + strandat 4601.538 kb on - strandat 4601.556 kb on - strandat 4601.569 kb on - strandat 4601.574 kb on + strand, within yjjQat 4601.574 kb on + strand, within yjjQat 4601.625 kb on - strand, within yjjQat 4601.626 kb on - strand, within yjjQat 4601.626 kb on - strand, within yjjQat 4601.634 kb on - strand, within yjjQat 4601.634 kb on - strand, within yjjQat 4601.635 kb on - strand, within yjjQat 4601.694 kb on - strand, within yjjQat 4601.702 kb on - strand, within yjjQat 4601.702 kb on - strand, within yjjQat 4601.772 kb on - strand, within yjjQat 4601.772 kb on - strand, within yjjQat 4601.772 kb on - strand, within yjjQat 4601.772 kb on - strand, within yjjQat 4601.774 kb on - strand, within yjjQat 4601.778 kb on - strand, within yjjQat 4601.778 kb on - strand, within yjjQat 4601.780 kb on - strand, within yjjQat 4601.780 kb on - strand, within yjjQat 4601.780 kb on - strand, within yjjQat 4601.782 kb on - strand, within yjjQat 4601.783 kb on - strand, within yjjQat 4601.783 kb on - strand, within yjjQat 4601.784 kb on - strand, within yjjQat 4601.784 kb on - strand, within yjjQat 4601.786 kb on + strand, within yjjQat 4601.789 kb on + strand, within yjjQat 4601.789 kb on - strand, within yjjQat 4601.792 kb on - strand, within yjjQat 4601.794 kb on - strand, within yjjQat 4601.794 kb on - strand, within yjjQat 4601.795 kb on - strand, within yjjQat 4601.795 kb on - strand, within yjjQat 4601.797 kb on - strand, within yjjQat 4601.797 kb on - strand, within yjjQat 4601.802 kb on - strand, within yjjQat 4601.816 kb on - strand, within yjjQat 4601.816 kb on - strand, within yjjQat 4601.816 kb on - strand, within yjjQat 4601.816 kb on - strand, within yjjQat 4601.828 kb on - strand, within yjjQat 4601.828 kb on - strand, within yjjQat 4601.828 kb on - strand, within yjjQat 4601.839 kb on - strand, within yjjQat 4601.861 kb on - strand, within yjjQat 4601.861 kb on - strand, within yjjQat 4601.880 kb on - strand, within yjjQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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4,599,536 + +0.1
4,599,561 - -0.8
4,599,589 + +1.0
4,599,593 + -2.7
4,599,609 - -2.2
4,599,609 - +1.4
4,599,609 - +0.5
4,599,619 + +1.7
4,599,681 - +1.5
4,599,761 - yjjB b4363 0.24 +0.0
4,599,761 - yjjB b4363 0.24 -1.3
4,599,831 + yjjB b4363 0.39 -0.3
4,599,837 - yjjB b4363 0.40 -3.0
4,599,873 + yjjB b4363 0.48 +1.5
4,599,873 + yjjB b4363 0.48 -2.0
4,599,874 + yjjB b4363 0.48 +0.7
4,599,874 + yjjB b4363 0.48 -0.1
4,599,941 + yjjB b4363 0.62 +1.7
4,600,053 - yjjB b4363 0.86 -1.7
4,600,138 - +0.9
4,600,198 + yjjP b4364 0.11 +0.8
4,600,208 - yjjP b4364 0.13 +2.3
4,600,211 + yjjP b4364 0.13 +0.9
4,600,219 - yjjP b4364 0.14 +1.7
4,600,219 - yjjP b4364 0.14 +2.0
4,600,273 + yjjP b4364 0.21 +1.0
4,600,273 + yjjP b4364 0.21 +2.2
4,600,455 + yjjP b4364 0.45 -0.3
4,600,485 - yjjP b4364 0.49 +1.8
4,600,485 - yjjP b4364 0.49 +0.5
4,600,538 + yjjP b4364 0.55 -1.5
4,600,538 + yjjP b4364 0.55 -0.8
4,600,588 + yjjP b4364 0.62 +1.7
4,600,595 + yjjP b4364 0.63 +0.9
4,600,613 + yjjP b4364 0.65 +1.7
4,600,621 + yjjP b4364 0.66 -0.2
4,600,629 - yjjP b4364 0.67 -2.4
4,600,629 - yjjP b4364 0.67 +1.1
4,600,629 - yjjP b4364 0.67 -0.3
4,600,680 + yjjP b4364 0.74 -1.3
4,600,694 - yjjP b4364 0.76 +2.4
4,600,716 + yjjP b4364 0.78 -1.7
4,600,730 - yjjP b4364 0.80 +0.7
4,600,750 + yjjP b4364 0.83 +2.3
4,600,750 + yjjP b4364 0.83 -1.3
4,600,756 - yjjP b4364 0.84 -1.3
4,600,757 + yjjP b4364 0.84 +1.0
4,600,757 - yjjP b4364 0.84 -1.8
4,600,758 - yjjP b4364 0.84 -3.1
4,600,781 - yjjP b4364 0.87 +1.1
4,600,781 - yjjP b4364 0.87 -4.1
4,600,785 + yjjP b4364 0.87 +0.8
4,600,804 + yjjP b4364 0.90 +1.3
4,600,841 + +1.1
4,600,843 + +1.0
4,600,853 - -1.5
4,600,853 - -0.8
4,600,859 + +0.5
4,600,859 + +3.4
4,600,867 - -1.7
4,600,874 + -2.3
4,600,874 + -1.3
4,600,876 - -1.1
4,600,878 + -1.2
4,600,882 + -2.7
4,600,882 - -0.1
4,600,888 + -1.7
4,600,888 + +1.0
4,600,890 + -1.2
4,600,894 + +0.9
4,600,894 + +1.4
4,600,895 + +0.5
4,600,895 + -2.2
4,600,902 - +2.5
4,600,902 - +1.5
4,600,902 - -0.5
4,600,928 - +1.5
4,600,943 - +1.5
4,600,951 + -0.5
4,600,956 + +1.8
4,600,956 + -0.5
4,600,968 + -2.6
4,600,988 + -2.0
4,601,002 + -0.8
4,601,002 + +1.0
4,601,006 + +4.7
4,601,006 + +1.5
4,601,049 + -0.8
4,601,049 + +1.5
4,601,053 + -0.1
4,601,053 + -2.5
4,601,063 + +1.5
4,601,349 + +1.5
4,601,371 + +1.5
4,601,538 - +2.2
4,601,556 - +1.5
4,601,569 - +1.5
4,601,574 + yjjQ b4365 0.10 +1.5
4,601,574 + yjjQ b4365 0.10 +1.5
4,601,625 - yjjQ b4365 0.17 +1.5
4,601,626 - yjjQ b4365 0.17 +1.5
4,601,626 - yjjQ b4365 0.17 +0.5
4,601,634 - yjjQ b4365 0.18 +1.5
4,601,634 - yjjQ b4365 0.18 +1.5
4,601,635 - yjjQ b4365 0.19 +1.5
4,601,694 - yjjQ b4365 0.27 -0.8
4,601,702 - yjjQ b4365 0.28 +0.5
4,601,702 - yjjQ b4365 0.28 +1.5
4,601,772 - yjjQ b4365 0.37 +1.2
4,601,772 - yjjQ b4365 0.37 +1.5
4,601,772 - yjjQ b4365 0.37 +0.2
4,601,772 - yjjQ b4365 0.37 -1.3
4,601,774 - yjjQ b4365 0.38 +4.3
4,601,778 - yjjQ b4365 0.38 -0.5
4,601,778 - yjjQ b4365 0.38 -0.8
4,601,780 - yjjQ b4365 0.39 +1.8
4,601,780 - yjjQ b4365 0.39 -0.5
4,601,780 - yjjQ b4365 0.39 -2.0
4,601,782 - yjjQ b4365 0.39 -0.7
4,601,783 - yjjQ b4365 0.39 -1.8
4,601,783 - yjjQ b4365 0.39 -2.2
4,601,784 - yjjQ b4365 0.39 -0.8
4,601,784 - yjjQ b4365 0.39 -0.8
4,601,786 + yjjQ b4365 0.39 +1.5
4,601,789 + yjjQ b4365 0.40 +1.5
4,601,789 - yjjQ b4365 0.40 -0.5
4,601,792 - yjjQ b4365 0.40 -1.1
4,601,794 - yjjQ b4365 0.40 -0.1
4,601,794 - yjjQ b4365 0.40 +3.3
4,601,795 - yjjQ b4365 0.41 +0.7
4,601,795 - yjjQ b4365 0.41 +5.8
4,601,797 - yjjQ b4365 0.41 -1.3
4,601,797 - yjjQ b4365 0.41 +2.1
4,601,802 - yjjQ b4365 0.42 +0.5
4,601,816 - yjjQ b4365 0.44 -1.1
4,601,816 - yjjQ b4365 0.44 -3.0
4,601,816 - yjjQ b4365 0.44 -2.7
4,601,816 - yjjQ b4365 0.44 +1.1
4,601,828 - yjjQ b4365 0.45 +0.3
4,601,828 - yjjQ b4365 0.45 +0.5
4,601,828 - yjjQ b4365 0.45 +2.0
4,601,839 - yjjQ b4365 0.47 -0.5
4,601,861 - yjjQ b4365 0.50 -2.2
4,601,861 - yjjQ b4365 0.50 -0.1
4,601,880 - yjjQ b4365 0.52 -0.1

Or see this region's nucleotide sequence