Strain Fitness in Escherichia coli BW25113 around b4266

Experiment: Ste41

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntidnT and idnO are separated by 61 nucleotidesidnO and idnD are separated by 23 nucleotides b4265: idnT - L-idonate and D-gluconate transporter (NCBI), at 4,489,229 to 4,490,548 idnT b4266: idnO - gluconate 5-dehydrogenase (NCBI), at 4,490,610 to 4,491,374 idnO b4267: idnD - L-idonate 5-dehydrogenase, NAD-binding (NCBI), at 4,491,398 to 4,492,429 idnD Position (kb) 4490 4491 4492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4489.659 kb on + strand, within idnTat 4489.665 kb on - strand, within idnTat 4489.695 kb on + strand, within idnTat 4489.695 kb on + strand, within idnTat 4489.698 kb on - strand, within idnTat 4489.698 kb on - strand, within idnTat 4489.707 kb on + strand, within idnTat 4489.712 kb on - strand, within idnTat 4489.713 kb on - strand, within idnTat 4489.713 kb on - strand, within idnTat 4489.718 kb on - strand, within idnTat 4489.841 kb on + strand, within idnTat 4489.842 kb on + strand, within idnTat 4489.963 kb on + strand, within idnTat 4489.986 kb on - strand, within idnTat 4490.094 kb on - strand, within idnTat 4490.110 kb on + strand, within idnTat 4490.113 kb on + strand, within idnTat 4490.123 kb on - strand, within idnTat 4490.130 kb on + strand, within idnTat 4490.144 kb on + strand, within idnTat 4490.144 kb on + strand, within idnTat 4490.144 kb on + strand, within idnTat 4490.144 kb on + strand, within idnTat 4490.144 kb on + strand, within idnTat 4490.149 kb on + strand, within idnTat 4490.191 kb on + strand, within idnTat 4490.246 kb on - strand, within idnTat 4490.253 kb on - strand, within idnTat 4490.295 kb on + strand, within idnTat 4490.302 kb on + strand, within idnTat 4490.302 kb on + strand, within idnTat 4490.333 kb on + strand, within idnTat 4490.341 kb on - strand, within idnTat 4490.346 kb on - strand, within idnTat 4490.395 kb on + strand, within idnTat 4490.395 kb on + strand, within idnTat 4490.411 kb on - strand, within idnTat 4490.411 kb on - strand, within idnTat 4490.426 kb on + strandat 4490.426 kb on + strandat 4490.430 kb on - strandat 4490.430 kb on - strandat 4490.550 kb on + strandat 4490.550 kb on + strandat 4490.594 kb on + strandat 4490.594 kb on + strandat 4490.596 kb on + strandat 4490.596 kb on + strandat 4490.627 kb on - strandat 4490.690 kb on + strand, within idnOat 4490.722 kb on - strand, within idnOat 4490.726 kb on - strand, within idnOat 4490.758 kb on - strand, within idnOat 4490.758 kb on - strand, within idnOat 4490.777 kb on - strand, within idnOat 4490.777 kb on - strand, within idnOat 4490.813 kb on + strand, within idnOat 4490.857 kb on - strand, within idnOat 4490.905 kb on + strand, within idnOat 4490.905 kb on + strand, within idnOat 4490.916 kb on + strand, within idnOat 4490.949 kb on - strand, within idnOat 4490.949 kb on - strand, within idnOat 4490.973 kb on - strand, within idnOat 4490.978 kb on - strand, within idnOat 4490.987 kb on + strand, within idnOat 4490.989 kb on - strand, within idnOat 4491.007 kb on - strand, within idnOat 4491.021 kb on + strand, within idnOat 4491.021 kb on + strand, within idnOat 4491.026 kb on + strand, within idnOat 4491.065 kb on + strand, within idnOat 4491.067 kb on + strand, within idnOat 4491.067 kb on + strand, within idnOat 4491.080 kb on - strand, within idnOat 4491.083 kb on + strand, within idnOat 4491.083 kb on + strand, within idnOat 4491.083 kb on + strand, within idnOat 4491.086 kb on + strand, within idnOat 4491.107 kb on - strand, within idnOat 4491.109 kb on + strand, within idnOat 4491.176 kb on + strand, within idnOat 4491.197 kb on + strand, within idnOat 4491.197 kb on + strand, within idnOat 4491.200 kb on + strand, within idnOat 4491.232 kb on + strand, within idnOat 4491.232 kb on + strand, within idnOat 4491.279 kb on + strand, within idnOat 4491.315 kb on + strandat 4491.320 kb on + strandat 4491.320 kb on + strandat 4491.320 kb on + strandat 4491.320 kb on + strandat 4491.320 kb on + strandat 4491.328 kb on - strandat 4491.328 kb on - strandat 4491.416 kb on - strandat 4491.416 kb on - strandat 4491.464 kb on - strandat 4491.465 kb on - strandat 4491.466 kb on - strandat 4491.476 kb on - strandat 4491.476 kb on - strandat 4491.486 kb on - strandat 4491.497 kb on - strandat 4491.509 kb on - strand, within idnDat 4491.530 kb on - strandat 4491.530 kb on - strand, within idnDat 4491.530 kb on - strand, within idnDat 4491.537 kb on - strand, within idnDat 4491.537 kb on - strand, within idnDat 4491.572 kb on - strand, within idnDat 4491.572 kb on - strand, within idnDat 4491.626 kb on + strand, within idnDat 4491.633 kb on + strand, within idnDat 4491.633 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.634 kb on - strand, within idnDat 4491.635 kb on - strand, within idnDat 4491.639 kb on - strand, within idnDat 4491.645 kb on + strand, within idnDat 4491.645 kb on + strand, within idnDat 4491.663 kb on - strand, within idnDat 4491.663 kb on - strand, within idnDat 4491.668 kb on + strand, within idnDat 4491.675 kb on - strand, within idnDat 4491.675 kb on - strand, within idnDat 4491.687 kb on + strand, within idnDat 4491.687 kb on + strand, within idnDat 4491.695 kb on - strand, within idnDat 4491.695 kb on - strand, within idnDat 4491.696 kb on + strand, within idnDat 4491.696 kb on + strand, within idnDat 4491.699 kb on - strand, within idnDat 4491.714 kb on - strand, within idnDat 4491.778 kb on - strand, within idnDat 4491.789 kb on - strand, within idnDat 4491.793 kb on + strand, within idnDat 4491.793 kb on + strand, within idnDat 4491.826 kb on + strand, within idnDat 4491.826 kb on + strand, within idnDat 4491.846 kb on - strand, within idnDat 4491.846 kb on - strand, within idnDat 4491.875 kb on - strand, within idnDat 4491.892 kb on + strand, within idnDat 4491.900 kb on - strand, within idnDat 4491.900 kb on - strand, within idnDat 4491.900 kb on - strand, within idnDat 4491.931 kb on - strand, within idnDat 4491.931 kb on - strand, within idnDat 4491.943 kb on - strand, within idnDat 4491.944 kb on - strand, within idnDat 4492.012 kb on + strand, within idnDat 4492.016 kb on - strand, within idnDat 4492.016 kb on - strand, within idnDat 4492.021 kb on - strand, within idnDat 4492.039 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.104 kb on + strand, within idnDat 4492.107 kb on + strand, within idnDat 4492.114 kb on + strand, within idnDat 4492.126 kb on + strand, within idnDat 4492.136 kb on + strand, within idnDat 4492.136 kb on + strand, within idnDat 4492.137 kb on + strand, within idnDat 4492.160 kb on + strand, within idnDat 4492.205 kb on + strand, within idnDat 4492.238 kb on + strand, within idnDat 4492.239 kb on - strand, within idnDat 4492.339 kb on - strandat 4492.367 kb on - strandat 4492.367 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
remove
4,489,659 + idnT b4265 0.33 +1.5
4,489,665 - idnT b4265 0.33 +0.0
4,489,695 + idnT b4265 0.35 +3.0
4,489,695 + idnT b4265 0.35 +1.0
4,489,698 - idnT b4265 0.36 +1.0
4,489,698 - idnT b4265 0.36 +0.1
4,489,707 + idnT b4265 0.36 -3.1
4,489,712 - idnT b4265 0.37 -0.1
4,489,713 - idnT b4265 0.37 -0.7
4,489,713 - idnT b4265 0.37 +0.5
4,489,718 - idnT b4265 0.37 -1.0
4,489,841 + idnT b4265 0.46 -0.5
4,489,842 + idnT b4265 0.46 +0.3
4,489,963 + idnT b4265 0.56 +1.1
4,489,986 - idnT b4265 0.57 +0.5
4,490,094 - idnT b4265 0.66 -0.1
4,490,110 + idnT b4265 0.67 +0.5
4,490,113 + idnT b4265 0.67 -3.1
4,490,123 - idnT b4265 0.68 -1.4
4,490,130 + idnT b4265 0.68 +1.5
4,490,144 + idnT b4265 0.69 -2.0
4,490,144 + idnT b4265 0.69 -0.5
4,490,144 + idnT b4265 0.69 +0.9
4,490,144 + idnT b4265 0.69 -0.5
4,490,144 + idnT b4265 0.69 -0.1
4,490,149 + idnT b4265 0.70 +0.5
4,490,191 + idnT b4265 0.73 +1.3
4,490,246 - idnT b4265 0.77 -0.1
4,490,253 - idnT b4265 0.78 -2.5
4,490,295 + idnT b4265 0.81 -0.3
4,490,302 + idnT b4265 0.81 -0.5
4,490,302 + idnT b4265 0.81 +1.0
4,490,333 + idnT b4265 0.84 -2.6
4,490,341 - idnT b4265 0.84 -0.7
4,490,346 - idnT b4265 0.85 -0.9
4,490,395 + idnT b4265 0.88 +1.9
4,490,395 + idnT b4265 0.88 +1.6
4,490,411 - idnT b4265 0.90 +2.4
4,490,411 - idnT b4265 0.90 -2.4
4,490,426 + -1.9
4,490,426 + +2.0
4,490,430 - +3.1
4,490,430 - +0.2
4,490,550 + -1.4
4,490,550 + +0.9
4,490,594 + -1.3
4,490,594 + +2.5
4,490,596 + +0.9
4,490,596 + -0.0
4,490,627 - -3.3
4,490,690 + idnO b4266 0.10 -0.7
4,490,722 - idnO b4266 0.15 -2.0
4,490,726 - idnO b4266 0.15 +1.5
4,490,758 - idnO b4266 0.19 -3.1
4,490,758 - idnO b4266 0.19 -2.8
4,490,777 - idnO b4266 0.22 -0.3
4,490,777 - idnO b4266 0.22 +0.8
4,490,813 + idnO b4266 0.27 -2.8
4,490,857 - idnO b4266 0.32 -0.1
4,490,905 + idnO b4266 0.39 +1.2
4,490,905 + idnO b4266 0.39 -0.1
4,490,916 + idnO b4266 0.40 +2.3
4,490,949 - idnO b4266 0.44 +0.1
4,490,949 - idnO b4266 0.44 -1.9
4,490,973 - idnO b4266 0.47 +0.5
4,490,978 - idnO b4266 0.48 -0.0
4,490,987 + idnO b4266 0.49 +0.9
4,490,989 - idnO b4266 0.50 -2.5
4,491,007 - idnO b4266 0.52 -2.7
4,491,021 + idnO b4266 0.54 +1.5
4,491,021 + idnO b4266 0.54 -1.1
4,491,026 + idnO b4266 0.54 -0.3
4,491,065 + idnO b4266 0.59 +0.1
4,491,067 + idnO b4266 0.60 -0.5
4,491,067 + idnO b4266 0.60 -2.2
4,491,080 - idnO b4266 0.61 +0.5
4,491,083 + idnO b4266 0.62 +3.5
4,491,083 + idnO b4266 0.62 +1.5
4,491,083 + idnO b4266 0.62 -1.5
4,491,086 + idnO b4266 0.62 -1.3
4,491,107 - idnO b4266 0.65 -0.1
4,491,109 + idnO b4266 0.65 -0.8
4,491,176 + idnO b4266 0.74 -3.5
4,491,197 + idnO b4266 0.77 +1.9
4,491,197 + idnO b4266 0.77 +1.5
4,491,200 + idnO b4266 0.77 -2.6
4,491,232 + idnO b4266 0.81 -0.9
4,491,232 + idnO b4266 0.81 -2.1
4,491,279 + idnO b4266 0.87 +2.1
4,491,315 + -1.5
4,491,320 + +0.5
4,491,320 + -0.5
4,491,320 + +1.5
4,491,320 + +4.5
4,491,320 + +1.5
4,491,328 - +0.5
4,491,328 - +1.5
4,491,416 - -1.1
4,491,416 - +2.2
4,491,464 - -1.6
4,491,465 - -3.1
4,491,466 - +0.5
4,491,476 - -0.1
4,491,476 - +0.2
4,491,486 - +1.9
4,491,497 - -0.4
4,491,509 - idnD b4267 0.11 +0.9
4,491,530 - +1.5
4,491,530 - idnD b4267 0.13 -1.3
4,491,530 - idnD b4267 0.13 +0.7
4,491,537 - idnD b4267 0.13 -1.7
4,491,537 - idnD b4267 0.13 -2.1
4,491,572 - idnD b4267 0.17 -2.2
4,491,572 - idnD b4267 0.17 -2.1
4,491,626 + idnD b4267 0.22 -1.5
4,491,633 + idnD b4267 0.23 -1.8
4,491,633 - idnD b4267 0.23 -0.9
4,491,634 - idnD b4267 0.23 +1.6
4,491,634 - idnD b4267 0.23 -1.9
4,491,634 - idnD b4267 0.23 -1.3
4,491,634 - idnD b4267 0.23 +2.0
4,491,634 - idnD b4267 0.23 -4.0
4,491,634 - idnD b4267 0.23 +1.5
4,491,634 - idnD b4267 0.23 -1.1
4,491,635 - idnD b4267 0.23 +0.1
4,491,639 - idnD b4267 0.23 +0.1
4,491,645 + idnD b4267 0.24 -1.1
4,491,645 + idnD b4267 0.24 +1.2
4,491,663 - idnD b4267 0.26 -2.0
4,491,663 - idnD b4267 0.26 +1.7
4,491,668 + idnD b4267 0.26 -1.7
4,491,675 - idnD b4267 0.27 +0.4
4,491,675 - idnD b4267 0.27 -0.1
4,491,687 + idnD b4267 0.28 -0.9
4,491,687 + idnD b4267 0.28 +4.9
4,491,695 - idnD b4267 0.29 -2.2
4,491,695 - idnD b4267 0.29 +0.5
4,491,696 + idnD b4267 0.29 +2.2
4,491,696 + idnD b4267 0.29 -0.1
4,491,699 - idnD b4267 0.29 -2.3
4,491,714 - idnD b4267 0.31 -1.9
4,491,778 - idnD b4267 0.37 -2.6
4,491,789 - idnD b4267 0.38 +1.1
4,491,793 + idnD b4267 0.38 +2.8
4,491,793 + idnD b4267 0.38 +3.9
4,491,826 + idnD b4267 0.41 -1.5
4,491,826 + idnD b4267 0.41 +0.5
4,491,846 - idnD b4267 0.43 +3.0
4,491,846 - idnD b4267 0.43 -1.3
4,491,875 - idnD b4267 0.46 -1.8
4,491,892 + idnD b4267 0.48 +2.1
4,491,900 - idnD b4267 0.49 +1.2
4,491,900 - idnD b4267 0.49 +1.9
4,491,900 - idnD b4267 0.49 -0.7
4,491,931 - idnD b4267 0.52 -2.5
4,491,931 - idnD b4267 0.52 +0.2
4,491,943 - idnD b4267 0.53 +2.8
4,491,944 - idnD b4267 0.53 +0.9
4,492,012 + idnD b4267 0.59 -2.1
4,492,016 - idnD b4267 0.60 -0.1
4,492,016 - idnD b4267 0.60 +0.5
4,492,021 - idnD b4267 0.60 +0.0
4,492,039 + idnD b4267 0.62 -0.8
4,492,104 + idnD b4267 0.68 -1.5
4,492,104 + idnD b4267 0.68 +3.5
4,492,104 + idnD b4267 0.68 -1.7
4,492,104 + idnD b4267 0.68 -0.5
4,492,104 + idnD b4267 0.68 +0.5
4,492,104 + idnD b4267 0.68 +0.5
4,492,104 + idnD b4267 0.68 +1.2
4,492,104 + idnD b4267 0.68 -0.9
4,492,104 + idnD b4267 0.68 -2.1
4,492,104 + idnD b4267 0.68 -1.1
4,492,104 + idnD b4267 0.68 +2.2
4,492,107 + idnD b4267 0.69 +0.7
4,492,114 + idnD b4267 0.69 +0.5
4,492,126 + idnD b4267 0.71 -1.1
4,492,136 + idnD b4267 0.72 -0.9
4,492,136 + idnD b4267 0.72 +0.9
4,492,137 + idnD b4267 0.72 +1.1
4,492,160 + idnD b4267 0.74 -0.1
4,492,205 + idnD b4267 0.78 -0.5
4,492,238 + idnD b4267 0.81 +1.5
4,492,239 - idnD b4267 0.81 +1.5
4,492,339 - -1.3
4,492,367 - -1.3
4,492,367 - -2.0

Or see this region's nucleotide sequence