Strain Fitness in Escherichia coli BW25113 around b4065

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjcD and yjcE are separated by 151 nucleotidesyjcE and yjcF are separated by 153 nucleotides b4064: yjcD - predicted permease (NCBI), at 4,276,502 to 4,277,851 yjcD b4065: yjcE - predicted cation/proton antiporter (NCBI), at 4,278,003 to 4,279,652 yjcE b4066: yjcF - hypothetical protein (NCBI), at 4,279,806 to 4,281,098 yjcF Position (kb) 4278 4279 4280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4277.301 kb on - strand, within yjcDat 4277.308 kb on + strand, within yjcDat 4277.308 kb on + strand, within yjcDat 4277.429 kb on + strand, within yjcDat 4277.520 kb on - strand, within yjcDat 4277.568 kb on - strand, within yjcDat 4277.570 kb on + strand, within yjcDat 4277.599 kb on + strand, within yjcDat 4277.599 kb on + strand, within yjcDat 4277.613 kb on + strand, within yjcDat 4277.613 kb on + strand, within yjcDat 4277.614 kb on + strand, within yjcDat 4277.621 kb on - strand, within yjcDat 4277.677 kb on + strand, within yjcDat 4277.706 kb on + strand, within yjcDat 4277.771 kb on - strandat 4277.771 kb on - strandat 4277.844 kb on + strandat 4277.846 kb on + strandat 4278.008 kb on - strandat 4278.008 kb on - strandat 4278.019 kb on - strandat 4278.058 kb on - strandat 4278.072 kb on - strandat 4278.115 kb on + strandat 4278.244 kb on - strand, within yjcEat 4278.283 kb on + strand, within yjcEat 4278.289 kb on + strand, within yjcEat 4278.301 kb on - strand, within yjcEat 4278.327 kb on - strand, within yjcEat 4278.331 kb on + strand, within yjcEat 4278.332 kb on - strand, within yjcEat 4278.382 kb on + strand, within yjcEat 4278.382 kb on + strand, within yjcEat 4278.417 kb on - strand, within yjcEat 4278.444 kb on + strand, within yjcEat 4278.507 kb on - strand, within yjcEat 4278.532 kb on - strand, within yjcEat 4278.532 kb on - strand, within yjcEat 4278.539 kb on - strand, within yjcEat 4278.702 kb on - strand, within yjcEat 4278.702 kb on - strand, within yjcEat 4278.707 kb on - strand, within yjcEat 4278.759 kb on + strand, within yjcEat 4278.785 kb on - strand, within yjcEat 4278.785 kb on - strand, within yjcEat 4278.958 kb on + strand, within yjcEat 4278.958 kb on + strand, within yjcEat 4278.981 kb on - strand, within yjcEat 4279.123 kb on - strand, within yjcEat 4279.123 kb on - strand, within yjcEat 4279.139 kb on + strand, within yjcEat 4279.162 kb on - strand, within yjcEat 4279.191 kb on - strand, within yjcEat 4279.210 kb on + strand, within yjcEat 4279.245 kb on - strand, within yjcEat 4279.249 kb on + strand, within yjcEat 4279.249 kb on + strand, within yjcEat 4279.260 kb on + strand, within yjcEat 4279.293 kb on - strand, within yjcEat 4279.308 kb on + strand, within yjcEat 4279.377 kb on - strand, within yjcEat 4279.377 kb on - strand, within yjcEat 4279.498 kb on + strandat 4279.500 kb on + strandat 4279.524 kb on + strandat 4279.566 kb on + strandat 4279.566 kb on + strandat 4279.582 kb on + strandat 4279.609 kb on + strandat 4279.619 kb on + strandat 4279.619 kb on + strandat 4279.626 kb on - strandat 4279.668 kb on + strandat 4279.672 kb on + strandat 4279.680 kb on - strandat 4279.683 kb on + strandat 4279.709 kb on - strandat 4279.709 kb on - strandat 4279.717 kb on - strandat 4279.717 kb on - strandat 4279.718 kb on + strandat 4279.718 kb on + strandat 4279.718 kb on + strandat 4279.718 kb on + strandat 4279.726 kb on - strandat 4279.726 kb on - strandat 4279.728 kb on + strandat 4279.728 kb on + strandat 4279.728 kb on + strandat 4279.736 kb on - strandat 4279.736 kb on - strandat 4279.736 kb on - strandat 4279.741 kb on - strandat 4279.741 kb on - strandat 4279.790 kb on + strandat 4279.799 kb on - strandat 4279.803 kb on + strandat 4279.809 kb on + strandat 4279.811 kb on - strandat 4279.811 kb on - strandat 4279.817 kb on - strandat 4279.826 kb on - strandat 4279.826 kb on - strandat 4279.850 kb on + strandat 4279.859 kb on - strandat 4279.859 kb on - strandat 4279.860 kb on - strandat 4279.861 kb on - strandat 4279.866 kb on - strandat 4279.866 kb on - strandat 4279.866 kb on - strandat 4279.871 kb on + strandat 4279.878 kb on - strandat 4279.881 kb on + strandat 4279.881 kb on + strandat 4279.881 kb on + strandat 4279.884 kb on + strandat 4279.884 kb on + strandat 4279.891 kb on + strandat 4279.891 kb on - strandat 4279.891 kb on - strandat 4279.924 kb on - strandat 4279.924 kb on - strandat 4279.924 kb on - strandat 4279.930 kb on - strandat 4279.931 kb on + strandat 4279.932 kb on - strandat 4279.932 kb on - strandat 4279.939 kb on - strand, within yjcFat 4279.968 kb on + strand, within yjcFat 4279.968 kb on + strand, within yjcFat 4279.979 kb on + strand, within yjcFat 4280.057 kb on - strand, within yjcF

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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4,277,301 - yjcD b4064 0.59 +2.1
4,277,308 + yjcD b4064 0.60 -0.1
4,277,308 + yjcD b4064 0.60 -2.1
4,277,429 + yjcD b4064 0.69 -2.3
4,277,520 - yjcD b4064 0.75 +0.1
4,277,568 - yjcD b4064 0.79 +0.3
4,277,570 + yjcD b4064 0.79 -2.9
4,277,599 + yjcD b4064 0.81 +1.3
4,277,599 + yjcD b4064 0.81 +1.5
4,277,613 + yjcD b4064 0.82 -1.7
4,277,613 + yjcD b4064 0.82 -0.9
4,277,614 + yjcD b4064 0.82 -3.1
4,277,621 - yjcD b4064 0.83 +0.6
4,277,677 + yjcD b4064 0.87 -0.8
4,277,706 + yjcD b4064 0.89 -2.9
4,277,771 - -0.1
4,277,771 - +3.0
4,277,844 + -0.7
4,277,846 + -1.0
4,278,008 - -0.8
4,278,008 - -1.4
4,278,019 - +1.5
4,278,058 - -2.7
4,278,072 - -1.5
4,278,115 + +0.4
4,278,244 - yjcE b4065 0.15 +2.2
4,278,283 + yjcE b4065 0.17 -1.9
4,278,289 + yjcE b4065 0.17 +0.4
4,278,301 - yjcE b4065 0.18 +1.3
4,278,327 - yjcE b4065 0.20 -0.2
4,278,331 + yjcE b4065 0.20 +0.7
4,278,332 - yjcE b4065 0.20 +1.0
4,278,382 + yjcE b4065 0.23 -1.4
4,278,382 + yjcE b4065 0.23 -0.9
4,278,417 - yjcE b4065 0.25 -2.4
4,278,444 + yjcE b4065 0.27 -1.5
4,278,507 - yjcE b4065 0.31 +0.8
4,278,532 - yjcE b4065 0.32 -0.6
4,278,532 - yjcE b4065 0.32 -1.9
4,278,539 - yjcE b4065 0.32 +0.5
4,278,702 - yjcE b4065 0.42 -1.9
4,278,702 - yjcE b4065 0.42 -2.5
4,278,707 - yjcE b4065 0.43 -1.0
4,278,759 + yjcE b4065 0.46 -0.5
4,278,785 - yjcE b4065 0.47 +1.5
4,278,785 - yjcE b4065 0.47 +0.9
4,278,958 + yjcE b4065 0.58 -1.4
4,278,958 + yjcE b4065 0.58 -0.9
4,278,981 - yjcE b4065 0.59 +1.1
4,279,123 - yjcE b4065 0.68 +0.5
4,279,123 - yjcE b4065 0.68 +1.8
4,279,139 + yjcE b4065 0.69 +1.6
4,279,162 - yjcE b4065 0.70 +1.4
4,279,191 - yjcE b4065 0.72 -2.9
4,279,210 + yjcE b4065 0.73 -2.4
4,279,245 - yjcE b4065 0.75 +2.1
4,279,249 + yjcE b4065 0.76 +1.2
4,279,249 + yjcE b4065 0.76 +2.9
4,279,260 + yjcE b4065 0.76 -1.4
4,279,293 - yjcE b4065 0.78 +1.3
4,279,308 + yjcE b4065 0.79 -2.2
4,279,377 - yjcE b4065 0.83 +2.9
4,279,377 - yjcE b4065 0.83 +1.5
4,279,498 + -3.5
4,279,500 + -1.7
4,279,524 + +4.6
4,279,566 + -2.6
4,279,566 + -2.4
4,279,582 + +1.0
4,279,609 + +0.7
4,279,619 + -2.5
4,279,619 + -1.1
4,279,626 - -1.5
4,279,668 + +1.8
4,279,672 + +0.8
4,279,680 - -0.9
4,279,683 + +4.6
4,279,709 - +0.5
4,279,709 - +0.5
4,279,717 - -0.1
4,279,717 - +1.5
4,279,718 + -0.9
4,279,718 + +0.5
4,279,718 + +1.5
4,279,718 + +1.5
4,279,726 - -0.9
4,279,726 - +0.5
4,279,728 + -1.4
4,279,728 + +1.5
4,279,728 + +1.5
4,279,736 - -0.5
4,279,736 - +0.5
4,279,736 - +1.3
4,279,741 - +1.5
4,279,741 - +1.5
4,279,790 + -2.7
4,279,799 - -0.5
4,279,803 + -0.1
4,279,809 + +2.2
4,279,811 - -2.0
4,279,811 - -2.1
4,279,817 - -1.6
4,279,826 - -2.5
4,279,826 - -0.7
4,279,850 + -0.1
4,279,859 - -2.0
4,279,859 - +0.8
4,279,860 - +1.3
4,279,861 - -0.0
4,279,866 - -0.9
4,279,866 - +2.0
4,279,866 - -0.1
4,279,871 + -0.5
4,279,878 - +0.9
4,279,881 + -1.5
4,279,881 + +0.9
4,279,881 + -1.1
4,279,884 + -0.1
4,279,884 + +1.5
4,279,891 + +0.5
4,279,891 - -0.7
4,279,891 - -1.0
4,279,924 - -0.1
4,279,924 - +2.0
4,279,924 - +0.8
4,279,930 - +1.5
4,279,931 + +1.5
4,279,932 - -0.9
4,279,932 - -0.1
4,279,939 - yjcF b4066 0.10 +1.5
4,279,968 + yjcF b4066 0.13 +0.5
4,279,968 + yjcF b4066 0.13 +1.5
4,279,979 + yjcF b4066 0.13 +1.5
4,280,057 - yjcF b4066 0.19 +1.5

Or see this region's nucleotide sequence