Strain Fitness in Escherichia coli BW25113 around b3470

Experiment: Ste41

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntzntA and yhhP are separated by 101 nucleotidesyhhP and yhhQ are separated by 220 nucleotidesyhhQ and b3472 are separated by 72 nucleotides b3469: zntA - zinc, cobalt and lead efflux system (NCBI), at 3,604,474 to 3,606,672 zntA b3470: yhhP - cell developmental protein SirA (NCBI), at 3,606,774 to 3,607,019 yhhP b3471: yhhQ - conserved inner membrane protein (NCBI), at 3,607,240 to 3,607,905 yhhQ b3472: b3472 - orf, hypothetical protein (VIMSS), at 3,607,978 to 3,608,535 b3472 Position (kb) 3606 3607 3608Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3605.846 kb on - strand, within zntAat 3605.849 kb on + strand, within zntAat 3605.870 kb on - strand, within zntAat 3605.905 kb on + strand, within zntAat 3605.905 kb on + strand, within zntAat 3605.909 kb on + strand, within zntAat 3605.932 kb on - strand, within zntAat 3606.008 kb on - strand, within zntAat 3606.008 kb on - strand, within zntAat 3606.008 kb on - strand, within zntAat 3606.021 kb on + strand, within zntAat 3606.069 kb on - strand, within zntAat 3606.074 kb on - strand, within zntAat 3606.078 kb on + strand, within zntAat 3606.100 kb on + strand, within zntAat 3606.100 kb on + strand, within zntAat 3606.144 kb on + strand, within zntAat 3606.198 kb on + strand, within zntAat 3606.203 kb on + strand, within zntAat 3606.222 kb on - strand, within zntAat 3606.298 kb on + strand, within zntAat 3606.326 kb on + strand, within zntAat 3606.331 kb on + strand, within zntAat 3606.350 kb on - strand, within zntAat 3606.350 kb on - strand, within zntAat 3606.367 kb on - strand, within zntAat 3606.367 kb on - strand, within zntAat 3606.367 kb on - strand, within zntAat 3606.383 kb on - strand, within zntAat 3606.383 kb on - strand, within zntAat 3606.414 kb on + strand, within zntAat 3606.414 kb on + strand, within zntAat 3606.448 kb on + strand, within zntAat 3606.448 kb on + strand, within zntAat 3606.454 kb on + strandat 3606.454 kb on + strandat 3606.468 kb on + strandat 3606.478 kb on + strandat 3606.478 kb on + strandat 3606.590 kb on + strandat 3606.602 kb on - strandat 3606.629 kb on - strandat 3606.631 kb on - strandat 3606.636 kb on - strandat 3606.667 kb on + strandat 3606.713 kb on - strandat 3606.713 kb on - strandat 3606.723 kb on - strandat 3606.723 kb on - strandat 3606.723 kb on - strandat 3606.727 kb on + strandat 3606.727 kb on + strandat 3606.727 kb on + strandat 3606.735 kb on - strandat 3606.735 kb on - strandat 3606.735 kb on - strandat 3606.736 kb on - strandat 3606.775 kb on - strandat 3606.775 kb on - strandat 3606.987 kb on + strand, within yhhPat 3606.997 kb on + strandat 3607.058 kb on - strandat 3607.059 kb on - strandat 3607.175 kb on - strandat 3607.177 kb on + strandat 3607.177 kb on + strandat 3607.214 kb on - strandat 3607.274 kb on - strandat 3607.274 kb on - strandat 3607.411 kb on - strand, within yhhQat 3607.435 kb on + strand, within yhhQat 3607.447 kb on + strand, within yhhQat 3607.466 kb on + strand, within yhhQat 3607.466 kb on + strand, within yhhQat 3607.482 kb on - strand, within yhhQat 3607.511 kb on - strand, within yhhQat 3607.542 kb on + strand, within yhhQat 3607.603 kb on + strand, within yhhQat 3607.603 kb on + strand, within yhhQat 3607.660 kb on - strand, within yhhQat 3607.660 kb on - strand, within yhhQat 3607.673 kb on + strand, within yhhQat 3607.725 kb on + strand, within yhhQat 3607.725 kb on + strand, within yhhQat 3607.753 kb on + strand, within yhhQat 3607.753 kb on + strand, within yhhQat 3607.954 kb on - strandat 3608.011 kb on - strandat 3608.016 kb on + strandat 3608.016 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
remove
3,605,846 - zntA b3469 0.62 +1.3
3,605,849 + zntA b3469 0.63 -1.0
3,605,870 - zntA b3469 0.63 -1.2
3,605,905 + zntA b3469 0.65 +0.3
3,605,905 + zntA b3469 0.65 -0.2
3,605,909 + zntA b3469 0.65 -0.2
3,605,932 - zntA b3469 0.66 -0.2
3,606,008 - zntA b3469 0.70 +0.3
3,606,008 - zntA b3469 0.70 -1.0
3,606,008 - zntA b3469 0.70 -0.2
3,606,021 + zntA b3469 0.70 -1.2
3,606,069 - zntA b3469 0.73 -2.4
3,606,074 - zntA b3469 0.73 -1.2
3,606,078 + zntA b3469 0.73 -0.2
3,606,100 + zntA b3469 0.74 -0.7
3,606,100 + zntA b3469 0.74 -0.2
3,606,144 + zntA b3469 0.76 +2.1
3,606,198 + zntA b3469 0.78 -1.0
3,606,203 + zntA b3469 0.79 +1.3
3,606,222 - zntA b3469 0.79 +1.7
3,606,298 + zntA b3469 0.83 -0.2
3,606,326 + zntA b3469 0.84 +0.8
3,606,331 + zntA b3469 0.84 +0.3
3,606,350 - zntA b3469 0.85 -0.2
3,606,350 - zntA b3469 0.85 -0.2
3,606,367 - zntA b3469 0.86 -1.5
3,606,367 - zntA b3469 0.86 -0.2
3,606,367 - zntA b3469 0.86 -0.2
3,606,383 - zntA b3469 0.87 -0.2
3,606,383 - zntA b3469 0.87 +1.3
3,606,414 + zntA b3469 0.88 +0.3
3,606,414 + zntA b3469 0.88 -0.2
3,606,448 + zntA b3469 0.90 -0.7
3,606,448 + zntA b3469 0.90 +0.9
3,606,454 + +0.3
3,606,454 + +1.3
3,606,468 + +0.3
3,606,478 + -0.2
3,606,478 + +1.3
3,606,590 + -1.7
3,606,602 - -0.7
3,606,629 - -0.2
3,606,631 - +1.3
3,606,636 - -0.2
3,606,667 + +0.8
3,606,713 - +2.1
3,606,713 - +2.4
3,606,723 - -0.5
3,606,723 - -0.7
3,606,723 - +0.8
3,606,727 + +0.2
3,606,727 + +0.1
3,606,727 + +1.5
3,606,735 - +1.5
3,606,735 - -2.5
3,606,735 - +1.1
3,606,736 - +0.5
3,606,775 - -3.5
3,606,775 - +1.0
3,606,987 + yhhP b3470 0.87 +1.3
3,606,997 + -1.2
3,607,058 - +0.6
3,607,059 - +0.1
3,607,175 - -2.5
3,607,177 + -1.2
3,607,177 + +0.0
3,607,214 - +1.8
3,607,274 - -1.2
3,607,274 - +2.2
3,607,411 - yhhQ b3471 0.26 +3.0
3,607,435 + yhhQ b3471 0.29 +2.0
3,607,447 + yhhQ b3471 0.31 +0.1
3,607,466 + yhhQ b3471 0.34 -0.7
3,607,466 + yhhQ b3471 0.34 -1.8
3,607,482 - yhhQ b3471 0.36 +0.9
3,607,511 - yhhQ b3471 0.41 +0.0
3,607,542 + yhhQ b3471 0.45 -1.8
3,607,603 + yhhQ b3471 0.55 -2.5
3,607,603 + yhhQ b3471 0.55 -0.9
3,607,660 - yhhQ b3471 0.63 +0.8
3,607,660 - yhhQ b3471 0.63 -1.5
3,607,673 + yhhQ b3471 0.65 -0.1
3,607,725 + yhhQ b3471 0.73 -0.7
3,607,725 + yhhQ b3471 0.73 -0.2
3,607,753 + yhhQ b3471 0.77 -2.2
3,607,753 + yhhQ b3471 0.77 -3.1
3,607,954 - +0.5
3,608,011 - -2.3
3,608,016 + -0.1
3,608,016 + -1.1

Or see this region's nucleotide sequence