Strain Fitness in Escherichia coli BW25113 around b3143

Experiment: Ste41

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyraH and yraI are separated by 79 nucleotidesyraI and yraJ are separated by 28 nucleotides b3142: yraH - predicted fimbrial-like adhesin protein (NCBI), at 3,285,448 to 3,286,032 yraH b3143: yraI - predicted periplasmic pilin chaperone (NCBI), at 3,286,112 to 3,286,807 yraI b3144: yraJ - predicted outer membrane protein (NCBI), at 3,286,836 to 3,289,352 yraJ Position (kb) 3286 3287Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3285.124 kb on + strandat 3285.124 kb on + strandat 3285.126 kb on + strandat 3285.126 kb on + strandat 3285.129 kb on + strandat 3285.238 kb on - strandat 3285.424 kb on - strandat 3285.424 kb on - strandat 3285.480 kb on - strandat 3285.485 kb on - strandat 3285.603 kb on - strand, within yraHat 3285.614 kb on - strand, within yraHat 3285.619 kb on - strand, within yraHat 3285.665 kb on - strand, within yraHat 3285.672 kb on + strand, within yraHat 3285.672 kb on + strand, within yraHat 3285.676 kb on - strand, within yraHat 3285.676 kb on - strand, within yraHat 3285.687 kb on + strand, within yraHat 3285.689 kb on - strand, within yraHat 3285.689 kb on - strand, within yraHat 3285.694 kb on - strand, within yraHat 3285.697 kb on + strand, within yraHat 3285.697 kb on - strand, within yraHat 3285.697 kb on - strand, within yraHat 3285.705 kb on - strand, within yraHat 3285.705 kb on - strand, within yraHat 3285.708 kb on - strand, within yraHat 3285.715 kb on + strand, within yraHat 3285.715 kb on + strand, within yraHat 3285.731 kb on + strand, within yraHat 3285.731 kb on + strand, within yraHat 3285.764 kb on + strand, within yraHat 3285.771 kb on - strand, within yraHat 3285.771 kb on - strand, within yraHat 3285.771 kb on - strand, within yraHat 3285.771 kb on - strand, within yraHat 3285.774 kb on - strand, within yraHat 3285.779 kb on - strand, within yraHat 3285.779 kb on - strand, within yraHat 3285.819 kb on + strand, within yraHat 3285.819 kb on + strand, within yraHat 3285.819 kb on + strand, within yraHat 3285.821 kb on + strand, within yraHat 3285.829 kb on - strand, within yraHat 3285.836 kb on - strand, within yraHat 3285.836 kb on - strand, within yraHat 3285.858 kb on + strand, within yraHat 3285.860 kb on + strand, within yraHat 3285.888 kb on - strand, within yraHat 3285.891 kb on - strand, within yraHat 3285.895 kb on + strand, within yraHat 3285.895 kb on + strand, within yraHat 3285.903 kb on - strand, within yraHat 3285.903 kb on - strand, within yraHat 3285.913 kb on - strand, within yraHat 3285.913 kb on - strand, within yraHat 3285.915 kb on + strand, within yraHat 3285.935 kb on - strand, within yraHat 3285.935 kb on - strand, within yraHat 3285.939 kb on + strand, within yraHat 3285.940 kb on - strand, within yraHat 3285.940 kb on - strand, within yraHat 3285.953 kb on + strand, within yraHat 3285.954 kb on + strand, within yraHat 3285.957 kb on + strand, within yraHat 3285.958 kb on - strand, within yraHat 3285.961 kb on + strand, within yraHat 3285.962 kb on + strand, within yraHat 3285.971 kb on + strand, within yraHat 3285.987 kb on + strandat 3285.987 kb on + strandat 3285.988 kb on + strandat 3285.997 kb on - strandat 3286.001 kb on + strandat 3286.010 kb on + strandat 3286.028 kb on + strandat 3286.028 kb on + strandat 3286.035 kb on + strandat 3286.041 kb on + strandat 3286.046 kb on + strandat 3286.046 kb on + strandat 3286.056 kb on + strandat 3286.086 kb on + strandat 3286.086 kb on + strandat 3286.144 kb on - strandat 3286.144 kb on - strandat 3286.147 kb on + strandat 3286.156 kb on + strandat 3286.161 kb on + strandat 3286.161 kb on + strandat 3286.164 kb on - strandat 3286.164 kb on - strandat 3286.164 kb on - strandat 3286.164 kb on - strandat 3286.164 kb on - strandat 3286.180 kb on - strandat 3286.190 kb on + strand, within yraIat 3286.190 kb on + strand, within yraIat 3286.190 kb on + strand, within yraIat 3286.198 kb on - strand, within yraIat 3286.198 kb on - strand, within yraIat 3286.203 kb on + strand, within yraIat 3286.206 kb on - strand, within yraIat 3286.210 kb on + strand, within yraIat 3286.210 kb on + strand, within yraIat 3286.211 kb on + strand, within yraIat 3286.212 kb on + strand, within yraIat 3286.213 kb on + strand, within yraIat 3286.213 kb on + strand, within yraIat 3286.213 kb on + strand, within yraIat 3286.221 kb on - strand, within yraIat 3286.221 kb on - strand, within yraIat 3286.232 kb on - strand, within yraIat 3286.232 kb on - strand, within yraIat 3286.232 kb on - strand, within yraIat 3286.238 kb on + strand, within yraIat 3286.238 kb on + strand, within yraIat 3286.238 kb on + strand, within yraIat 3286.255 kb on - strand, within yraIat 3286.269 kb on + strand, within yraIat 3286.315 kb on - strand, within yraIat 3286.328 kb on + strand, within yraIat 3286.336 kb on - strand, within yraIat 3286.337 kb on - strand, within yraIat 3286.345 kb on + strand, within yraIat 3286.348 kb on - strand, within yraIat 3286.365 kb on - strand, within yraIat 3286.366 kb on + strand, within yraIat 3286.374 kb on - strand, within yraIat 3286.376 kb on - strand, within yraIat 3286.452 kb on - strand, within yraIat 3286.481 kb on - strand, within yraIat 3286.538 kb on - strand, within yraIat 3286.538 kb on - strand, within yraIat 3286.541 kb on - strand, within yraIat 3286.543 kb on - strand, within yraIat 3286.543 kb on - strand, within yraIat 3286.543 kb on - strand, within yraIat 3286.546 kb on - strand, within yraIat 3286.546 kb on - strand, within yraIat 3286.546 kb on - strand, within yraIat 3286.546 kb on - strand, within yraIat 3286.546 kb on - strand, within yraIat 3286.546 kb on - strand, within yraIat 3286.547 kb on - strand, within yraIat 3286.548 kb on - strand, within yraIat 3286.548 kb on - strand, within yraIat 3286.548 kb on - strand, within yraIat 3286.548 kb on - strand, within yraIat 3286.550 kb on + strand, within yraIat 3286.560 kb on - strand, within yraIat 3286.560 kb on - strand, within yraIat 3286.560 kb on - strand, within yraIat 3286.560 kb on - strand, within yraIat 3286.560 kb on - strand, within yraIat 3286.560 kb on - strand, within yraIat 3286.572 kb on - strand, within yraIat 3286.617 kb on - strand, within yraIat 3286.627 kb on - strand, within yraIat 3286.639 kb on - strand, within yraIat 3286.639 kb on - strand, within yraIat 3286.711 kb on - strand, within yraIat 3286.719 kb on + strand, within yraIat 3286.726 kb on - strand, within yraIat 3286.726 kb on - strand, within yraIat 3286.727 kb on - strand, within yraIat 3286.727 kb on - strand, within yraIat 3286.757 kb on + strandat 3286.757 kb on + strandat 3286.757 kb on - strandat 3286.762 kb on - strandat 3286.762 kb on - strandat 3286.770 kb on - strandat 3286.793 kb on + strandat 3286.818 kb on + strandat 3286.844 kb on - strandat 3286.850 kb on + strandat 3286.858 kb on - strandat 3286.864 kb on + strandat 3286.919 kb on - strandat 3286.929 kb on + strandat 3286.929 kb on + strandat 3286.930 kb on + strandat 3286.937 kb on + strandat 3286.977 kb on + strandat 3286.983 kb on - strandat 3287.125 kb on + strand, within yraJat 3287.340 kb on + strand, within yraJat 3287.394 kb on - strand, within yraJat 3287.396 kb on + strand, within yraJat 3287.396 kb on + strand, within yraJat 3287.507 kb on - strand, within yraJat 3287.531 kb on - strand, within yraJat 3287.657 kb on - strand, within yraJat 3287.712 kb on + strand, within yraJat 3287.729 kb on + strand, within yraJat 3287.731 kb on - strand, within yraJat 3287.739 kb on - strand, within yraJat 3287.739 kb on - strand, within yraJat 3287.766 kb on + strand, within yraJat 3287.771 kb on - strand, within yraJat 3287.779 kb on - strand, within yraJ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
remove
3,285,124 + -1.3
3,285,124 + -1.1
3,285,126 + -2.3
3,285,126 + -0.8
3,285,129 + +1.5
3,285,238 - +1.5
3,285,424 - +1.5
3,285,424 - -0.2
3,285,480 - +1.5
3,285,485 - -0.5
3,285,603 - yraH b3142 0.26 -0.1
3,285,614 - yraH b3142 0.28 +1.5
3,285,619 - yraH b3142 0.29 +1.5
3,285,665 - yraH b3142 0.37 -0.8
3,285,672 + yraH b3142 0.38 +0.5
3,285,672 + yraH b3142 0.38 +0.5
3,285,676 - yraH b3142 0.39 +1.5
3,285,676 - yraH b3142 0.39 +3.3
3,285,687 + yraH b3142 0.41 +0.5
3,285,689 - yraH b3142 0.41 -0.1
3,285,689 - yraH b3142 0.41 +1.5
3,285,694 - yraH b3142 0.42 +1.9
3,285,697 + yraH b3142 0.43 -0.1
3,285,697 - yraH b3142 0.43 -0.5
3,285,697 - yraH b3142 0.43 +1.2
3,285,705 - yraH b3142 0.44 +2.8
3,285,705 - yraH b3142 0.44 +1.1
3,285,708 - yraH b3142 0.44 -1.5
3,285,715 + yraH b3142 0.46 -0.1
3,285,715 + yraH b3142 0.46 +0.5
3,285,731 + yraH b3142 0.48 +0.5
3,285,731 + yraH b3142 0.48 -1.5
3,285,764 + yraH b3142 0.54 -2.1
3,285,771 - yraH b3142 0.55 -0.1
3,285,771 - yraH b3142 0.55 +1.5
3,285,771 - yraH b3142 0.55 -0.8
3,285,771 - yraH b3142 0.55 +0.5
3,285,774 - yraH b3142 0.56 -0.1
3,285,779 - yraH b3142 0.57 -0.5
3,285,779 - yraH b3142 0.57 -2.0
3,285,819 + yraH b3142 0.63 +0.5
3,285,819 + yraH b3142 0.63 +0.7
3,285,819 + yraH b3142 0.63 -2.7
3,285,821 + yraH b3142 0.64 +0.8
3,285,829 - yraH b3142 0.65 +2.0
3,285,836 - yraH b3142 0.66 -0.8
3,285,836 - yraH b3142 0.66 -0.1
3,285,858 + yraH b3142 0.70 -0.7
3,285,860 + yraH b3142 0.70 -1.3
3,285,888 - yraH b3142 0.75 +0.1
3,285,891 - yraH b3142 0.76 -3.4
3,285,895 + yraH b3142 0.76 -1.4
3,285,895 + yraH b3142 0.76 +1.3
3,285,903 - yraH b3142 0.78 -0.9
3,285,903 - yraH b3142 0.78 -1.3
3,285,913 - yraH b3142 0.79 +1.5
3,285,913 - yraH b3142 0.79 +1.5
3,285,915 + yraH b3142 0.80 +1.4
3,285,935 - yraH b3142 0.83 +1.5
3,285,935 - yraH b3142 0.83 -1.0
3,285,939 + yraH b3142 0.84 +1.3
3,285,940 - yraH b3142 0.84 +1.5
3,285,940 - yraH b3142 0.84 +1.5
3,285,953 + yraH b3142 0.86 -2.3
3,285,954 + yraH b3142 0.86 -0.4
3,285,957 + yraH b3142 0.87 -1.3
3,285,958 - yraH b3142 0.87 -2.5
3,285,961 + yraH b3142 0.88 +1.3
3,285,962 + yraH b3142 0.88 -1.1
3,285,971 + yraH b3142 0.89 +0.4
3,285,987 + +0.5
3,285,987 + +1.7
3,285,988 + -1.4
3,285,997 - +1.5
3,286,001 + -0.5
3,286,010 + -0.3
3,286,028 + -0.4
3,286,028 + -2.2
3,286,035 + +2.0
3,286,041 + -2.8
3,286,046 + -0.8
3,286,046 + -0.5
3,286,056 + +2.1
3,286,086 + +2.3
3,286,086 + -1.5
3,286,144 - +1.5
3,286,144 - -0.1
3,286,147 + +1.5
3,286,156 + -1.3
3,286,161 + -1.3
3,286,161 + -0.5
3,286,164 - -1.3
3,286,164 - -1.1
3,286,164 - -2.8
3,286,164 - -3.1
3,286,164 - -2.3
3,286,180 - -1.1
3,286,190 + yraI b3143 0.11 -0.5
3,286,190 + yraI b3143 0.11 -0.8
3,286,190 + yraI b3143 0.11 -0.5
3,286,198 - yraI b3143 0.12 +4.1
3,286,198 - yraI b3143 0.12 +0.3
3,286,203 + yraI b3143 0.13 +2.4
3,286,206 - yraI b3143 0.14 +0.8
3,286,210 + yraI b3143 0.14 +0.5
3,286,210 + yraI b3143 0.14 -0.1
3,286,211 + yraI b3143 0.14 -1.5
3,286,212 + yraI b3143 0.14 +1.5
3,286,213 + yraI b3143 0.15 -1.1
3,286,213 + yraI b3143 0.15 -2.0
3,286,213 + yraI b3143 0.15 +3.5
3,286,221 - yraI b3143 0.16 -0.1
3,286,221 - yraI b3143 0.16 +0.2
3,286,232 - yraI b3143 0.17 -0.8
3,286,232 - yraI b3143 0.17 -1.8
3,286,232 - yraI b3143 0.17 -1.7
3,286,238 + yraI b3143 0.18 +0.6
3,286,238 + yraI b3143 0.18 -0.7
3,286,238 + yraI b3143 0.18 +0.4
3,286,255 - yraI b3143 0.21 +3.1
3,286,269 + yraI b3143 0.23 +0.5
3,286,315 - yraI b3143 0.29 +0.5
3,286,328 + yraI b3143 0.31 +1.5
3,286,336 - yraI b3143 0.32 -1.5
3,286,337 - yraI b3143 0.32 +2.5
3,286,345 + yraI b3143 0.33 +1.5
3,286,348 - yraI b3143 0.34 -1.1
3,286,365 - yraI b3143 0.36 -1.1
3,286,366 + yraI b3143 0.36 -0.8
3,286,374 - yraI b3143 0.38 +2.5
3,286,376 - yraI b3143 0.38 +0.5
3,286,452 - yraI b3143 0.49 -0.4
3,286,481 - yraI b3143 0.53 -0.5
3,286,538 - yraI b3143 0.61 +2.6
3,286,538 - yraI b3143 0.61 -0.5
3,286,541 - yraI b3143 0.62 +0.6
3,286,543 - yraI b3143 0.62 -2.0
3,286,543 - yraI b3143 0.62 -1.9
3,286,543 - yraI b3143 0.62 +0.6
3,286,546 - yraI b3143 0.62 -0.1
3,286,546 - yraI b3143 0.62 -0.1
3,286,546 - yraI b3143 0.62 -1.3
3,286,546 - yraI b3143 0.62 +2.8
3,286,546 - yraI b3143 0.62 +2.5
3,286,546 - yraI b3143 0.62 +1.1
3,286,547 - yraI b3143 0.62 +0.7
3,286,548 - yraI b3143 0.63 +1.1
3,286,548 - yraI b3143 0.63 +0.8
3,286,548 - yraI b3143 0.63 +1.5
3,286,548 - yraI b3143 0.63 +1.9
3,286,550 + yraI b3143 0.63 +1.5
3,286,560 - yraI b3143 0.64 +1.7
3,286,560 - yraI b3143 0.64 +1.5
3,286,560 - yraI b3143 0.64 +3.2
3,286,560 - yraI b3143 0.64 -1.1
3,286,560 - yraI b3143 0.64 -2.3
3,286,560 - yraI b3143 0.64 -1.5
3,286,572 - yraI b3143 0.66 +2.2
3,286,617 - yraI b3143 0.73 -0.9
3,286,627 - yraI b3143 0.74 -1.5
3,286,639 - yraI b3143 0.76 +0.8
3,286,639 - yraI b3143 0.76 +3.5
3,286,711 - yraI b3143 0.86 -1.3
3,286,719 + yraI b3143 0.87 +0.5
3,286,726 - yraI b3143 0.88 +0.8
3,286,726 - yraI b3143 0.88 +1.7
3,286,727 - yraI b3143 0.88 -0.3
3,286,727 - yraI b3143 0.88 +1.5
3,286,757 + +0.5
3,286,757 + +3.7
3,286,757 - +0.6
3,286,762 - +1.5
3,286,762 - -0.5
3,286,770 - +2.3
3,286,793 + +2.7
3,286,818 + -1.3
3,286,844 - +0.9
3,286,850 + -0.1
3,286,858 - +0.6
3,286,864 + +1.5
3,286,919 - +1.3
3,286,929 + +1.5
3,286,929 + -1.1
3,286,930 + -0.1
3,286,937 + -1.8
3,286,977 + -1.2
3,286,983 - +1.1
3,287,125 + yraJ b3144 0.11 -0.7
3,287,340 + yraJ b3144 0.20 -2.2
3,287,394 - yraJ b3144 0.22 +1.4
3,287,396 + yraJ b3144 0.22 -1.3
3,287,396 + yraJ b3144 0.22 -1.3
3,287,507 - yraJ b3144 0.27 +1.5
3,287,531 - yraJ b3144 0.28 +0.4
3,287,657 - yraJ b3144 0.33 +0.3
3,287,712 + yraJ b3144 0.35 -0.9
3,287,729 + yraJ b3144 0.35 -2.9
3,287,731 - yraJ b3144 0.36 -2.8
3,287,739 - yraJ b3144 0.36 -2.5
3,287,739 - yraJ b3144 0.36 -0.8
3,287,766 + yraJ b3144 0.37 -3.5
3,287,771 - yraJ b3144 0.37 -0.2
3,287,779 - yraJ b3144 0.37 -0.3

Or see this region's nucleotide sequence