Strain Fitness in Escherichia coli BW25113 around b3143
Experiment: Ste41
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ste41 |
---|---|---|---|---|---|
remove | |||||
3,285,124 | + | -1.3 | |||
3,285,124 | + | -1.1 | |||
3,285,126 | + | -2.3 | |||
3,285,126 | + | -0.8 | |||
3,285,129 | + | +1.5 | |||
3,285,238 | - | +1.5 | |||
3,285,424 | - | +1.5 | |||
3,285,424 | - | -0.2 | |||
3,285,480 | - | +1.5 | |||
3,285,485 | - | -0.5 | |||
3,285,603 | - | yraH | b3142 | 0.26 | -0.1 |
3,285,614 | - | yraH | b3142 | 0.28 | +1.5 |
3,285,619 | - | yraH | b3142 | 0.29 | +1.5 |
3,285,665 | - | yraH | b3142 | 0.37 | -0.8 |
3,285,672 | + | yraH | b3142 | 0.38 | +0.5 |
3,285,672 | + | yraH | b3142 | 0.38 | +0.5 |
3,285,676 | - | yraH | b3142 | 0.39 | +1.5 |
3,285,676 | - | yraH | b3142 | 0.39 | +3.3 |
3,285,687 | + | yraH | b3142 | 0.41 | +0.5 |
3,285,689 | - | yraH | b3142 | 0.41 | -0.1 |
3,285,689 | - | yraH | b3142 | 0.41 | +1.5 |
3,285,694 | - | yraH | b3142 | 0.42 | +1.9 |
3,285,697 | + | yraH | b3142 | 0.43 | -0.1 |
3,285,697 | - | yraH | b3142 | 0.43 | -0.5 |
3,285,697 | - | yraH | b3142 | 0.43 | +1.2 |
3,285,705 | - | yraH | b3142 | 0.44 | +2.8 |
3,285,705 | - | yraH | b3142 | 0.44 | +1.1 |
3,285,708 | - | yraH | b3142 | 0.44 | -1.5 |
3,285,715 | + | yraH | b3142 | 0.46 | -0.1 |
3,285,715 | + | yraH | b3142 | 0.46 | +0.5 |
3,285,731 | + | yraH | b3142 | 0.48 | +0.5 |
3,285,731 | + | yraH | b3142 | 0.48 | -1.5 |
3,285,764 | + | yraH | b3142 | 0.54 | -2.1 |
3,285,771 | - | yraH | b3142 | 0.55 | -0.1 |
3,285,771 | - | yraH | b3142 | 0.55 | +1.5 |
3,285,771 | - | yraH | b3142 | 0.55 | -0.8 |
3,285,771 | - | yraH | b3142 | 0.55 | +0.5 |
3,285,774 | - | yraH | b3142 | 0.56 | -0.1 |
3,285,779 | - | yraH | b3142 | 0.57 | -0.5 |
3,285,779 | - | yraH | b3142 | 0.57 | -2.0 |
3,285,819 | + | yraH | b3142 | 0.63 | +0.5 |
3,285,819 | + | yraH | b3142 | 0.63 | +0.7 |
3,285,819 | + | yraH | b3142 | 0.63 | -2.7 |
3,285,821 | + | yraH | b3142 | 0.64 | +0.8 |
3,285,829 | - | yraH | b3142 | 0.65 | +2.0 |
3,285,836 | - | yraH | b3142 | 0.66 | -0.8 |
3,285,836 | - | yraH | b3142 | 0.66 | -0.1 |
3,285,858 | + | yraH | b3142 | 0.70 | -0.7 |
3,285,860 | + | yraH | b3142 | 0.70 | -1.3 |
3,285,888 | - | yraH | b3142 | 0.75 | +0.1 |
3,285,891 | - | yraH | b3142 | 0.76 | -3.4 |
3,285,895 | + | yraH | b3142 | 0.76 | -1.4 |
3,285,895 | + | yraH | b3142 | 0.76 | +1.3 |
3,285,903 | - | yraH | b3142 | 0.78 | -0.9 |
3,285,903 | - | yraH | b3142 | 0.78 | -1.3 |
3,285,913 | - | yraH | b3142 | 0.79 | +1.5 |
3,285,913 | - | yraH | b3142 | 0.79 | +1.5 |
3,285,915 | + | yraH | b3142 | 0.80 | +1.4 |
3,285,935 | - | yraH | b3142 | 0.83 | +1.5 |
3,285,935 | - | yraH | b3142 | 0.83 | -1.0 |
3,285,939 | + | yraH | b3142 | 0.84 | +1.3 |
3,285,940 | - | yraH | b3142 | 0.84 | +1.5 |
3,285,940 | - | yraH | b3142 | 0.84 | +1.5 |
3,285,953 | + | yraH | b3142 | 0.86 | -2.3 |
3,285,954 | + | yraH | b3142 | 0.86 | -0.4 |
3,285,957 | + | yraH | b3142 | 0.87 | -1.3 |
3,285,958 | - | yraH | b3142 | 0.87 | -2.5 |
3,285,961 | + | yraH | b3142 | 0.88 | +1.3 |
3,285,962 | + | yraH | b3142 | 0.88 | -1.1 |
3,285,971 | + | yraH | b3142 | 0.89 | +0.4 |
3,285,987 | + | +0.5 | |||
3,285,987 | + | +1.7 | |||
3,285,988 | + | -1.4 | |||
3,285,997 | - | +1.5 | |||
3,286,001 | + | -0.5 | |||
3,286,010 | + | -0.3 | |||
3,286,028 | + | -0.4 | |||
3,286,028 | + | -2.2 | |||
3,286,035 | + | +2.0 | |||
3,286,041 | + | -2.8 | |||
3,286,046 | + | -0.8 | |||
3,286,046 | + | -0.5 | |||
3,286,056 | + | +2.1 | |||
3,286,086 | + | +2.3 | |||
3,286,086 | + | -1.5 | |||
3,286,144 | - | +1.5 | |||
3,286,144 | - | -0.1 | |||
3,286,147 | + | +1.5 | |||
3,286,156 | + | -1.3 | |||
3,286,161 | + | -1.3 | |||
3,286,161 | + | -0.5 | |||
3,286,164 | - | -1.3 | |||
3,286,164 | - | -1.1 | |||
3,286,164 | - | -2.8 | |||
3,286,164 | - | -3.1 | |||
3,286,164 | - | -2.3 | |||
3,286,180 | - | -1.1 | |||
3,286,190 | + | yraI | b3143 | 0.11 | -0.5 |
3,286,190 | + | yraI | b3143 | 0.11 | -0.8 |
3,286,190 | + | yraI | b3143 | 0.11 | -0.5 |
3,286,198 | - | yraI | b3143 | 0.12 | +4.1 |
3,286,198 | - | yraI | b3143 | 0.12 | +0.3 |
3,286,203 | + | yraI | b3143 | 0.13 | +2.4 |
3,286,206 | - | yraI | b3143 | 0.14 | +0.8 |
3,286,210 | + | yraI | b3143 | 0.14 | +0.5 |
3,286,210 | + | yraI | b3143 | 0.14 | -0.1 |
3,286,211 | + | yraI | b3143 | 0.14 | -1.5 |
3,286,212 | + | yraI | b3143 | 0.14 | +1.5 |
3,286,213 | + | yraI | b3143 | 0.15 | -1.1 |
3,286,213 | + | yraI | b3143 | 0.15 | -2.0 |
3,286,213 | + | yraI | b3143 | 0.15 | +3.5 |
3,286,221 | - | yraI | b3143 | 0.16 | -0.1 |
3,286,221 | - | yraI | b3143 | 0.16 | +0.2 |
3,286,232 | - | yraI | b3143 | 0.17 | -0.8 |
3,286,232 | - | yraI | b3143 | 0.17 | -1.8 |
3,286,232 | - | yraI | b3143 | 0.17 | -1.7 |
3,286,238 | + | yraI | b3143 | 0.18 | +0.6 |
3,286,238 | + | yraI | b3143 | 0.18 | -0.7 |
3,286,238 | + | yraI | b3143 | 0.18 | +0.4 |
3,286,255 | - | yraI | b3143 | 0.21 | +3.1 |
3,286,269 | + | yraI | b3143 | 0.23 | +0.5 |
3,286,315 | - | yraI | b3143 | 0.29 | +0.5 |
3,286,328 | + | yraI | b3143 | 0.31 | +1.5 |
3,286,336 | - | yraI | b3143 | 0.32 | -1.5 |
3,286,337 | - | yraI | b3143 | 0.32 | +2.5 |
3,286,345 | + | yraI | b3143 | 0.33 | +1.5 |
3,286,348 | - | yraI | b3143 | 0.34 | -1.1 |
3,286,365 | - | yraI | b3143 | 0.36 | -1.1 |
3,286,366 | + | yraI | b3143 | 0.36 | -0.8 |
3,286,374 | - | yraI | b3143 | 0.38 | +2.5 |
3,286,376 | - | yraI | b3143 | 0.38 | +0.5 |
3,286,452 | - | yraI | b3143 | 0.49 | -0.4 |
3,286,481 | - | yraI | b3143 | 0.53 | -0.5 |
3,286,538 | - | yraI | b3143 | 0.61 | +2.6 |
3,286,538 | - | yraI | b3143 | 0.61 | -0.5 |
3,286,541 | - | yraI | b3143 | 0.62 | +0.6 |
3,286,543 | - | yraI | b3143 | 0.62 | -2.0 |
3,286,543 | - | yraI | b3143 | 0.62 | -1.9 |
3,286,543 | - | yraI | b3143 | 0.62 | +0.6 |
3,286,546 | - | yraI | b3143 | 0.62 | -0.1 |
3,286,546 | - | yraI | b3143 | 0.62 | -0.1 |
3,286,546 | - | yraI | b3143 | 0.62 | -1.3 |
3,286,546 | - | yraI | b3143 | 0.62 | +2.8 |
3,286,546 | - | yraI | b3143 | 0.62 | +2.5 |
3,286,546 | - | yraI | b3143 | 0.62 | +1.1 |
3,286,547 | - | yraI | b3143 | 0.62 | +0.7 |
3,286,548 | - | yraI | b3143 | 0.63 | +1.1 |
3,286,548 | - | yraI | b3143 | 0.63 | +0.8 |
3,286,548 | - | yraI | b3143 | 0.63 | +1.5 |
3,286,548 | - | yraI | b3143 | 0.63 | +1.9 |
3,286,550 | + | yraI | b3143 | 0.63 | +1.5 |
3,286,560 | - | yraI | b3143 | 0.64 | +1.7 |
3,286,560 | - | yraI | b3143 | 0.64 | +1.5 |
3,286,560 | - | yraI | b3143 | 0.64 | +3.2 |
3,286,560 | - | yraI | b3143 | 0.64 | -1.1 |
3,286,560 | - | yraI | b3143 | 0.64 | -2.3 |
3,286,560 | - | yraI | b3143 | 0.64 | -1.5 |
3,286,572 | - | yraI | b3143 | 0.66 | +2.2 |
3,286,617 | - | yraI | b3143 | 0.73 | -0.9 |
3,286,627 | - | yraI | b3143 | 0.74 | -1.5 |
3,286,639 | - | yraI | b3143 | 0.76 | +0.8 |
3,286,639 | - | yraI | b3143 | 0.76 | +3.5 |
3,286,711 | - | yraI | b3143 | 0.86 | -1.3 |
3,286,719 | + | yraI | b3143 | 0.87 | +0.5 |
3,286,726 | - | yraI | b3143 | 0.88 | +0.8 |
3,286,726 | - | yraI | b3143 | 0.88 | +1.7 |
3,286,727 | - | yraI | b3143 | 0.88 | -0.3 |
3,286,727 | - | yraI | b3143 | 0.88 | +1.5 |
3,286,757 | + | +0.5 | |||
3,286,757 | + | +3.7 | |||
3,286,757 | - | +0.6 | |||
3,286,762 | - | +1.5 | |||
3,286,762 | - | -0.5 | |||
3,286,770 | - | +2.3 | |||
3,286,793 | + | +2.7 | |||
3,286,818 | + | -1.3 | |||
3,286,844 | - | +0.9 | |||
3,286,850 | + | -0.1 | |||
3,286,858 | - | +0.6 | |||
3,286,864 | + | +1.5 | |||
3,286,919 | - | +1.3 | |||
3,286,929 | + | +1.5 | |||
3,286,929 | + | -1.1 | |||
3,286,930 | + | -0.1 | |||
3,286,937 | + | -1.8 | |||
3,286,977 | + | -1.2 | |||
3,286,983 | - | +1.1 | |||
3,287,125 | + | yraJ | b3144 | 0.11 | -0.7 |
3,287,340 | + | yraJ | b3144 | 0.20 | -2.2 |
3,287,394 | - | yraJ | b3144 | 0.22 | +1.4 |
3,287,396 | + | yraJ | b3144 | 0.22 | -1.3 |
3,287,396 | + | yraJ | b3144 | 0.22 | -1.3 |
3,287,507 | - | yraJ | b3144 | 0.27 | +1.5 |
3,287,531 | - | yraJ | b3144 | 0.28 | +0.4 |
3,287,657 | - | yraJ | b3144 | 0.33 | +0.3 |
3,287,712 | + | yraJ | b3144 | 0.35 | -0.9 |
3,287,729 | + | yraJ | b3144 | 0.35 | -2.9 |
3,287,731 | - | yraJ | b3144 | 0.36 | -2.8 |
3,287,739 | - | yraJ | b3144 | 0.36 | -2.5 |
3,287,739 | - | yraJ | b3144 | 0.36 | -0.8 |
3,287,766 | + | yraJ | b3144 | 0.37 | -3.5 |
3,287,771 | - | yraJ | b3144 | 0.37 | -0.2 |
3,287,779 | - | yraJ | b3144 | 0.37 | -0.3 |
Or see this region's nucleotide sequence