Strain Fitness in Escherichia coli BW25113 around b2977

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglcB and glcG are separated by 21 nucleotidesglcG and glcF are separated by 4 nucleotides b2976: glcB - malate synthase (NCBI), at 3,119,656 to 3,121,827 glcB b2977: glcG - hypothetical protein (NCBI), at 3,121,849 to 3,122,253 glcG b4467: glcF - glycolate oxidase iron-sulfur subunit (NCBI), at 3,122,258 to 3,123,481 glcF Position (kb) 3121 3122 3123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3121.026 kb on - strand, within glcBat 3121.036 kb on - strand, within glcBat 3121.038 kb on - strand, within glcBat 3121.118 kb on - strand, within glcBat 3121.175 kb on + strand, within glcBat 3121.175 kb on + strand, within glcBat 3121.223 kb on + strand, within glcBat 3121.251 kb on + strand, within glcBat 3121.258 kb on - strand, within glcBat 3121.258 kb on - strandat 3121.269 kb on + strand, within glcBat 3121.269 kb on + strand, within glcBat 3121.383 kb on - strand, within glcBat 3121.407 kb on - strand, within glcBat 3121.408 kb on + strand, within glcBat 3121.419 kb on - strand, within glcBat 3121.419 kb on - strand, within glcBat 3121.556 kb on + strand, within glcBat 3121.564 kb on - strand, within glcBat 3121.574 kb on - strand, within glcBat 3121.672 kb on - strandat 3121.735 kb on + strandat 3121.735 kb on + strandat 3121.812 kb on - strandat 3121.812 kb on - strandat 3121.863 kb on - strandat 3121.877 kb on + strandat 3121.976 kb on + strand, within glcGat 3121.976 kb on + strand, within glcGat 3121.992 kb on - strand, within glcGat 3121.992 kb on - strand, within glcGat 3122.025 kb on + strand, within glcGat 3122.025 kb on + strand, within glcGat 3122.033 kb on + strand, within glcGat 3122.069 kb on + strand, within glcGat 3122.319 kb on + strandat 3122.433 kb on - strand, within glcFat 3122.433 kb on - strand, within glcFat 3122.531 kb on + strand, within glcFat 3122.556 kb on + strand, within glcFat 3122.567 kb on + strand, within glcFat 3122.704 kb on + strand, within glcFat 3122.711 kb on - strand, within glcFat 3122.861 kb on + strand, within glcFat 3122.886 kb on - strand, within glcFat 3122.908 kb on - strand, within glcFat 3122.908 kb on - strand, within glcFat 3122.940 kb on + strand, within glcFat 3122.940 kb on + strand, within glcFat 3122.940 kb on + strand, within glcFat 3122.981 kb on + strand, within glcFat 3122.981 kb on + strand, within glcFat 3122.981 kb on + strand, within glcFat 3123.039 kb on - strand, within glcFat 3123.217 kb on + strand, within glcFat 3123.219 kb on + strand, within glcF

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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3,121,026 - glcB b2976 0.63 +0.9
3,121,036 - glcB b2976 0.64 +1.8
3,121,038 - glcB b2976 0.64 +1.3
3,121,118 - glcB b2976 0.67 +0.7
3,121,175 + glcB b2976 0.70 -1.1
3,121,175 + glcB b2976 0.70 +1.7
3,121,223 + glcB b2976 0.72 -0.2
3,121,251 + glcB b2976 0.73 -0.2
3,121,258 - glcB b2976 0.74 +1.2
3,121,258 - -1.1
3,121,269 + glcB b2976 0.74 +1.2
3,121,269 + glcB b2976 0.74 -0.1
3,121,383 - glcB b2976 0.80 +1.3
3,121,407 - glcB b2976 0.81 -2.6
3,121,408 + glcB b2976 0.81 +0.1
3,121,419 - glcB b2976 0.81 -0.6
3,121,419 - glcB b2976 0.81 +0.7
3,121,556 + glcB b2976 0.87 +0.3
3,121,564 - glcB b2976 0.88 -3.0
3,121,574 - glcB b2976 0.88 +0.6
3,121,672 - +2.0
3,121,735 + +1.0
3,121,735 + -1.2
3,121,812 - +0.3
3,121,812 - +0.4
3,121,863 - -1.3
3,121,877 + +2.1
3,121,976 + glcG b2977 0.31 -1.9
3,121,976 + glcG b2977 0.31 -2.2
3,121,992 - glcG b2977 0.35 +1.4
3,121,992 - glcG b2977 0.35 -0.5
3,122,025 + glcG b2977 0.43 -1.2
3,122,025 + glcG b2977 0.43 -2.5
3,122,033 + glcG b2977 0.45 +1.6
3,122,069 + glcG b2977 0.54 -1.3
3,122,319 + -0.1
3,122,433 - glcF b4467 0.14 -2.6
3,122,433 - glcF b4467 0.14 -2.2
3,122,531 + glcF b4467 0.22 -2.3
3,122,556 + glcF b4467 0.24 -0.3
3,122,567 + glcF b4467 0.25 -3.3
3,122,704 + glcF b4467 0.36 -0.8
3,122,711 - glcF b4467 0.37 +1.4
3,122,861 + glcF b4467 0.49 -0.7
3,122,886 - glcF b4467 0.51 -1.9
3,122,908 - glcF b4467 0.53 -0.9
3,122,908 - glcF b4467 0.53 -1.3
3,122,940 + glcF b4467 0.56 -0.9
3,122,940 + glcF b4467 0.56 -0.9
3,122,940 + glcF b4467 0.56 -2.5
3,122,981 + glcF b4467 0.59 -0.2
3,122,981 + glcF b4467 0.59 -0.8
3,122,981 + glcF b4467 0.59 +1.6
3,123,039 - glcF b4467 0.64 +1.2
3,123,217 + glcF b4467 0.78 -0.1
3,123,219 + glcF b4467 0.79 +0.1

Or see this region's nucleotide sequence