Strain Fitness in Escherichia coli BW25113 around b2710

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygaA and norV are separated by 186 nucleotidesnorV and norW overlap by 4 nucleotides b2709: ygaA - putative 2-component transcriptional regulator (VIMSS), at 2,828,797 to 2,830,311 ygaA b2710: norV - anaerobic nitric oxide reductase flavorubredoxin (NCBI), at 2,830,498 to 2,831,937 norV b2711: norW - nitric oxide reductase (NCBI), at 2,831,934 to 2,833,067 norW Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2829.527 kb on + strand, within ygaAat 2829.527 kb on + strand, within ygaAat 2829.544 kb on - strand, within ygaAat 2829.583 kb on + strand, within ygaAat 2829.583 kb on + strand, within ygaAat 2829.687 kb on + strand, within ygaAat 2829.687 kb on + strand, within ygaAat 2829.846 kb on - strand, within ygaAat 2829.869 kb on - strand, within ygaAat 2829.871 kb on + strand, within ygaAat 2829.966 kb on + strand, within ygaAat 2829.979 kb on - strand, within ygaAat 2830.059 kb on - strand, within ygaAat 2830.059 kb on - strand, within ygaAat 2830.129 kb on - strand, within ygaAat 2830.141 kb on + strand, within ygaAat 2830.141 kb on + strand, within ygaAat 2830.152 kb on - strand, within ygaAat 2830.260 kb on - strandat 2830.683 kb on - strand, within norVat 2830.683 kb on - strand, within norVat 2830.708 kb on - strand, within norVat 2830.708 kb on - strand, within norVat 2830.743 kb on + strand, within norVat 2830.756 kb on - strand, within norVat 2830.756 kb on - strand, within norVat 2830.821 kb on + strand, within norVat 2830.983 kb on + strand, within norVat 2830.986 kb on - strand, within norVat 2830.986 kb on - strand, within norVat 2831.011 kb on - strand, within norVat 2831.011 kb on - strand, within norVat 2831.018 kb on - strand, within norVat 2831.018 kb on - strand, within norVat 2831.075 kb on - strand, within norVat 2831.075 kb on - strand, within norVat 2831.092 kb on - strand, within norVat 2831.109 kb on + strand, within norVat 2831.134 kb on + strand, within norVat 2831.273 kb on + strand, within norVat 2831.273 kb on + strand, within norVat 2831.314 kb on + strand, within norVat 2831.314 kb on + strand, within norVat 2831.629 kb on + strand, within norVat 2831.646 kb on - strand, within norVat 2831.646 kb on - strand, within norVat 2831.651 kb on + strand, within norVat 2831.706 kb on - strand, within norVat 2831.732 kb on - strand, within norVat 2831.748 kb on + strand, within norVat 2831.748 kb on + strand, within norVat 2831.829 kb on + strandat 2831.934 kb on - strandat 2831.957 kb on - strandat 2832.048 kb on + strand, within norWat 2832.064 kb on - strand, within norWat 2832.150 kb on - strand, within norWat 2832.281 kb on + strand, within norWat 2832.281 kb on + strand, within norWat 2832.364 kb on + strand, within norWat 2832.384 kb on - strand, within norWat 2832.384 kb on - strand, within norWat 2832.526 kb on + strand, within norWat 2832.896 kb on - strand, within norW

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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2,829,527 + ygaA b2709 0.48 +0.9
2,829,527 + ygaA b2709 0.48 -1.4
2,829,544 - ygaA b2709 0.49 -0.3
2,829,583 + ygaA b2709 0.52 -2.2
2,829,583 + ygaA b2709 0.52 -0.7
2,829,687 + ygaA b2709 0.59 -0.1
2,829,687 + ygaA b2709 0.59 +0.2
2,829,846 - ygaA b2709 0.69 -0.9
2,829,869 - ygaA b2709 0.71 -0.1
2,829,871 + ygaA b2709 0.71 +0.7
2,829,966 + ygaA b2709 0.77 -0.9
2,829,979 - ygaA b2709 0.78 +0.3
2,830,059 - ygaA b2709 0.83 -0.9
2,830,059 - ygaA b2709 0.83 +0.8
2,830,129 - ygaA b2709 0.88 -1.9
2,830,141 + ygaA b2709 0.89 -1.9
2,830,141 + ygaA b2709 0.89 +1.1
2,830,152 - ygaA b2709 0.89 +0.2
2,830,260 - -2.5
2,830,683 - norV b2710 0.13 -1.7
2,830,683 - norV b2710 0.13 -2.0
2,830,708 - norV b2710 0.15 +0.1
2,830,708 - norV b2710 0.15 +0.4
2,830,743 + norV b2710 0.17 -1.9
2,830,756 - norV b2710 0.18 +0.3
2,830,756 - norV b2710 0.18 +1.5
2,830,821 + norV b2710 0.22 -0.0
2,830,983 + norV b2710 0.34 +0.4
2,830,986 - norV b2710 0.34 +1.0
2,830,986 - norV b2710 0.34 -1.4
2,831,011 - norV b2710 0.36 +1.2
2,831,011 - norV b2710 0.36 +1.5
2,831,018 - norV b2710 0.36 -2.7
2,831,018 - norV b2710 0.36 +0.2
2,831,075 - norV b2710 0.40 +1.0
2,831,075 - norV b2710 0.40 -0.2
2,831,092 - norV b2710 0.41 +0.5
2,831,109 + norV b2710 0.42 -2.9
2,831,134 + norV b2710 0.44 -1.5
2,831,273 + norV b2710 0.54 -0.3
2,831,273 + norV b2710 0.54 +0.2
2,831,314 + norV b2710 0.57 -2.1
2,831,314 + norV b2710 0.57 -2.1
2,831,629 + norV b2710 0.79 -1.5
2,831,646 - norV b2710 0.80 +1.0
2,831,646 - norV b2710 0.80 +1.8
2,831,651 + norV b2710 0.80 +0.3
2,831,706 - norV b2710 0.84 +1.1
2,831,732 - norV b2710 0.86 -2.6
2,831,748 + norV b2710 0.87 -0.1
2,831,748 + norV b2710 0.87 +2.2
2,831,829 + +0.1
2,831,934 - -1.3
2,831,957 - -0.1
2,832,048 + norW b2711 0.10 +0.3
2,832,064 - norW b2711 0.11 -1.1
2,832,150 - norW b2711 0.19 -2.5
2,832,281 + norW b2711 0.31 -0.5
2,832,281 + norW b2711 0.31 +0.2
2,832,364 + norW b2711 0.38 -0.5
2,832,384 - norW b2711 0.40 -0.9
2,832,384 - norW b2711 0.40 -1.7
2,832,526 + norW b2711 0.52 -0.4
2,832,896 - norW b2711 0.85 +2.2

Or see this region's nucleotide sequence