Experiment: Ste41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfjL and yfjM are separated by 359 nucleotides yfjM and yfjN are separated by 141 nucleotides yfjN and yfjO overlap by 8 nucleotides yfjO and yfjP are separated by 354 nucleotides
b2628: yfjL - CP4-57 prophage; predicted protein (NCBI), at 2,761,559 to 2,763,175
yfjL
b2629: yfjM - CP4-57 prophage; predicted protein (NCBI), at 2,763,535 to 2,763,798
yfjM
b2630: yfjN - CP4-57 prophage; RNase LS (NCBI), at 2,763,940 to 2,765,013
yfjN
b2631: yfjO - orf, hypothetical protein (VIMSS), at 2,765,006 to 2,765,377
yfjO
b2632: yfjP - CP4-57 prophage; predicted GTP-binding protein (NCBI), at 2,765,732 to 2,766,595
yfjP
Position (kb)
2763
2764
2765
2766 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2762.982 kb on + strand, within yfjL at 2763.052 kb on - strand at 2763.059 kb on + strand at 2763.074 kb on - strand at 2763.104 kb on - strand at 2763.119 kb on + strand at 2763.137 kb on + strand at 2763.173 kb on + strand at 2763.265 kb on - strand at 2763.265 kb on - strand at 2763.365 kb on + strand at 2763.411 kb on + strand at 2763.445 kb on + strand at 2763.445 kb on + strand at 2763.561 kb on - strand at 2763.561 kb on - strand at 2763.588 kb on - strand, within yfjM at 2763.611 kb on - strand, within yfjM at 2763.621 kb on - strand, within yfjM at 2763.642 kb on + strand, within yfjM at 2763.650 kb on - strand, within yfjM at 2763.652 kb on + strand, within yfjM at 2763.758 kb on + strand, within yfjM at 2763.758 kb on + strand, within yfjM at 2763.833 kb on + strand at 2763.833 kb on + strand at 2763.836 kb on + strand at 2763.836 kb on + strand at 2763.841 kb on - strand at 2763.844 kb on - strand at 2763.844 kb on - strand at 2763.851 kb on + strand at 2763.921 kb on + strand at 2764.043 kb on + strand at 2764.082 kb on + strand, within yfjN at 2764.093 kb on + strand, within yfjN at 2764.093 kb on + strand, within yfjN at 2764.188 kb on + strand, within yfjN at 2764.188 kb on - strand, within yfjN at 2764.219 kb on - strand, within yfjN at 2764.219 kb on - strand, within yfjN at 2764.251 kb on + strand, within yfjN at 2764.315 kb on - strand, within yfjN at 2764.315 kb on - strand, within yfjN at 2764.319 kb on + strand, within yfjN at 2764.325 kb on - strand, within yfjN at 2764.329 kb on + strand, within yfjN at 2764.346 kb on - strand, within yfjN at 2764.346 kb on - strand, within yfjN at 2764.348 kb on - strand, within yfjN at 2764.348 kb on - strand, within yfjN at 2764.404 kb on + strand, within yfjN at 2764.404 kb on + strand, within yfjN at 2764.426 kb on + strand, within yfjN at 2764.524 kb on - strand, within yfjN at 2764.541 kb on - strand, within yfjN at 2764.541 kb on - strand, within yfjN at 2764.585 kb on + strand, within yfjN at 2764.587 kb on - strand, within yfjN at 2764.587 kb on - strand, within yfjN at 2764.589 kb on + strand, within yfjN at 2764.748 kb on + strand, within yfjN at 2764.761 kb on - strand, within yfjN at 2764.908 kb on + strand at 2764.976 kb on - strand at 2765.212 kb on - strand at 2765.336 kb on - strand, within yfjO at 2765.354 kb on - strand at 2765.354 kb on - strand at 2765.411 kb on - strand at 2765.433 kb on - strand at 2765.434 kb on - strand at 2765.480 kb on + strand at 2765.536 kb on - strand at 2765.667 kb on - strand at 2765.991 kb on - strand, within yfjP at 2765.991 kb on - strand, within yfjP
Per-strain Table
Position Strand Gene LocusTag Fraction Ste41 remove 2,762,982 + yfjL b2628 0.88 -1.8 2,763,052 - +1.5 2,763,059 + -3.1 2,763,074 - -2.1 2,763,104 - -0.1 2,763,119 + +0.4 2,763,137 + -1.3 2,763,173 + +0.9 2,763,265 - -1.1 2,763,265 - +2.4 2,763,365 + +2.7 2,763,411 + +0.5 2,763,445 + -3.3 2,763,445 + +1.3 2,763,561 - +0.2 2,763,561 - +1.6 2,763,588 - yfjM b2629 0.20 +1.7 2,763,611 - yfjM b2629 0.29 -0.3 2,763,621 - yfjM b2629 0.33 +0.1 2,763,642 + yfjM b2629 0.41 +0.9 2,763,650 - yfjM b2629 0.44 +2.0 2,763,652 + yfjM b2629 0.44 +1.0 2,763,758 + yfjM b2629 0.84 -1.6 2,763,758 + yfjM b2629 0.84 +0.7 2,763,833 + -1.5 2,763,833 + -1.9 2,763,836 + -2.3 2,763,836 + +2.0 2,763,841 - -1.2 2,763,844 - +2.2 2,763,844 - -1.3 2,763,851 + -2.1 2,763,921 + +1.4 2,764,043 + +1.9 2,764,082 + yfjN b2630 0.13 +2.8 2,764,093 + yfjN b2630 0.14 +3.3 2,764,093 + yfjN b2630 0.14 +2.0 2,764,188 + yfjN b2630 0.23 -2.7 2,764,188 - yfjN b2630 0.23 -1.1 2,764,219 - yfjN b2630 0.26 +2.4 2,764,219 - yfjN b2630 0.26 +1.6 2,764,251 + yfjN b2630 0.29 +0.8 2,764,315 - yfjN b2630 0.35 -1.4 2,764,315 - yfjN b2630 0.35 -2.9 2,764,319 + yfjN b2630 0.35 -0.5 2,764,325 - yfjN b2630 0.36 -0.9 2,764,329 + yfjN b2630 0.36 +0.1 2,764,346 - yfjN b2630 0.38 -0.4 2,764,346 - yfjN b2630 0.38 +0.1 2,764,348 - yfjN b2630 0.38 -0.1 2,764,348 - yfjN b2630 0.38 +2.8 2,764,404 + yfjN b2630 0.43 +2.1 2,764,404 + yfjN b2630 0.43 +1.5 2,764,426 + yfjN b2630 0.45 -1.7 2,764,524 - yfjN b2630 0.54 +1.3 2,764,541 - yfjN b2630 0.56 -3.4 2,764,541 - yfjN b2630 0.56 +0.7 2,764,585 + yfjN b2630 0.60 -2.7 2,764,587 - yfjN b2630 0.60 +2.3 2,764,587 - yfjN b2630 0.60 -1.3 2,764,589 + yfjN b2630 0.60 +0.5 2,764,748 + yfjN b2630 0.75 +0.4 2,764,761 - yfjN b2630 0.76 -1.6 2,764,908 + +1.9 2,764,976 - +0.1 2,765,212 - +1.5 2,765,336 - yfjO b2631 0.89 -2.5 2,765,354 - +0.5 2,765,354 - -0.1 2,765,411 - +1.2 2,765,433 - +0.4 2,765,434 - +2.2 2,765,480 + -2.6 2,765,536 - +3.1 2,765,667 - +0.8 2,765,991 - yfjP b2632 0.30 -0.5 2,765,991 - yfjP b2632 0.30 -2.2
Or see this region's nucleotide sequence