Strain Fitness in Escherichia coli BW25113 around b2257

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfbG and yfbH overlap by 4 nucleotidesyfbH and arnT overlap by 1 nucleotidesarnT and yfbW overlap by 4 nucleotidesyfbW and b2258 overlap by 1 nucleotidesb2258 and pmrD overlap by 7 nucleotides b2255: yfbG - hypothetical protein (NCBI), at 2,366,061 to 2,368,043 yfbG b2256: yfbH - hypothetical protein (NCBI), at 2,368,040 to 2,368,930 yfbH b2257: arnT - 4-amino-4-deoxy-L-arabinose transferase (NCBI), at 2,368,930 to 2,370,582 arnT b4544: yfbW - hypothetical protein (NCBI), at 2,370,579 to 2,370,914 yfbW b2258: b2258 - putative transport/receptor protein (VIMSS), at 2,370,914 to 2,371,300 b2258 b2259: pmrD - polymyxin resistance protein B (VIMSS), at 2,371,294 to 2,371,560 pmrD Position (kb) 2368 2369 2370 2371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2367.936 kb on + strandat 2368.161 kb on + strand, within yfbHat 2368.161 kb on + strand, within yfbHat 2368.165 kb on + strand, within yfbHat 2368.165 kb on + strand, within yfbHat 2368.358 kb on + strand, within yfbHat 2368.453 kb on - strand, within yfbHat 2368.600 kb on + strand, within yfbHat 2368.608 kb on - strand, within yfbHat 2368.633 kb on + strand, within yfbHat 2368.633 kb on + strand, within yfbHat 2368.668 kb on - strand, within yfbHat 2368.691 kb on + strand, within yfbHat 2368.796 kb on + strand, within yfbHat 2368.805 kb on + strand, within yfbHat 2368.834 kb on + strand, within yfbHat 2368.857 kb on + strandat 2368.892 kb on + strandat 2368.923 kb on + strandat 2368.990 kb on - strandat 2369.236 kb on - strand, within arnTat 2369.265 kb on - strand, within arnTat 2369.327 kb on + strand, within arnTat 2369.327 kb on + strand, within arnTat 2369.668 kb on + strand, within arnTat 2369.668 kb on + strand, within arnTat 2369.742 kb on + strand, within arnTat 2369.762 kb on - strand, within arnTat 2369.762 kb on - strand, within arnTat 2369.881 kb on - strand, within arnTat 2370.286 kb on - strand, within arnTat 2370.294 kb on - strand, within arnTat 2370.308 kb on + strand, within arnTat 2370.308 kb on + strand, within arnTat 2370.326 kb on - strand, within arnTat 2370.493 kb on + strandat 2370.551 kb on + strandat 2370.608 kb on - strandat 2370.715 kb on + strand, within yfbWat 2370.722 kb on - strand, within yfbWat 2370.723 kb on - strand, within yfbWat 2370.723 kb on - strand, within yfbWat 2370.747 kb on + strand, within yfbWat 2370.747 kb on + strand, within yfbWat 2370.909 kb on + strandat 2370.909 kb on - strandat 2370.911 kb on + strandat 2371.053 kb on + strand, within b2258at 2371.397 kb on - strand, within pmrDat 2371.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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2,367,936 + +0.1
2,368,161 + yfbH b2256 0.14 -1.8
2,368,161 + yfbH b2256 0.14 -3.9
2,368,165 + yfbH b2256 0.14 +0.5
2,368,165 + yfbH b2256 0.14 -2.8
2,368,358 + yfbH b2256 0.36 +0.8
2,368,453 - yfbH b2256 0.46 +1.4
2,368,600 + yfbH b2256 0.63 +1.0
2,368,608 - yfbH b2256 0.64 +1.2
2,368,633 + yfbH b2256 0.67 +0.3
2,368,633 + yfbH b2256 0.67 -2.1
2,368,668 - yfbH b2256 0.70 +0.6
2,368,691 + yfbH b2256 0.73 +1.7
2,368,796 + yfbH b2256 0.85 -2.1
2,368,805 + yfbH b2256 0.86 +1.0
2,368,834 + yfbH b2256 0.89 -0.0
2,368,857 + -0.3
2,368,892 + +0.1
2,368,923 + +0.8
2,368,990 - +0.6
2,369,236 - arnT b2257 0.19 +1.6
2,369,265 - arnT b2257 0.20 -1.8
2,369,327 + arnT b2257 0.24 +0.8
2,369,327 + arnT b2257 0.24 +1.1
2,369,668 + arnT b2257 0.45 +3.0
2,369,668 + arnT b2257 0.45 -0.4
2,369,742 + arnT b2257 0.49 -0.4
2,369,762 - arnT b2257 0.50 -1.9
2,369,762 - arnT b2257 0.50 -2.1
2,369,881 - arnT b2257 0.58 +1.6
2,370,286 - arnT b2257 0.82 +1.6
2,370,294 - arnT b2257 0.83 +1.3
2,370,308 + arnT b2257 0.83 +2.4
2,370,308 + arnT b2257 0.83 +3.2
2,370,326 - arnT b2257 0.84 +1.7
2,370,493 + -1.4
2,370,551 + +2.7
2,370,608 - -2.3
2,370,715 + yfbW b4544 0.40 -1.3
2,370,722 - yfbW b4544 0.43 -1.8
2,370,723 - yfbW b4544 0.43 -2.4
2,370,723 - yfbW b4544 0.43 +3.6
2,370,747 + yfbW b4544 0.50 -1.0
2,370,747 + yfbW b4544 0.50 -1.4
2,370,909 + +0.4
2,370,909 - +2.2
2,370,911 + -2.3
2,371,053 + b2258 b2258 0.36 +0.8
2,371,397 - pmrD b2259 0.39 -2.8
2,371,562 - -2.0

Or see this region's nucleotide sequence