Strain Fitness in Escherichia coli BW25113 around b2210

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteco and mqo are separated by 714 nucleotidesmqo and yojI are separated by 217 nucleotides b2209: eco - ecotin precursor (NCBI), at 2,301,927 to 2,302,415 eco b2210: mqo - malate:quinone oxidoreductase (NCBI), at 2,303,130 to 2,304,776 mqo b2211: yojI - fused predicted multidrug transport subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 2,304,994 to 2,306,637 yojI Position (kb) 2303 2304 2305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2302.294 kb on + strand, within ecoat 2302.310 kb on - strand, within ecoat 2302.522 kb on + strandat 2302.748 kb on + strandat 2302.763 kb on + strandat 2302.763 kb on + strandat 2302.773 kb on + strandat 2303.223 kb on - strandat 2303.225 kb on + strandat 2303.226 kb on + strandat 2303.244 kb on + strandat 2303.346 kb on - strand, within mqoat 2303.346 kb on - strand, within mqoat 2303.421 kb on - strand, within mqoat 2303.421 kb on - strand, within mqoat 2303.579 kb on - strand, within mqoat 2303.672 kb on + strand, within mqoat 2303.680 kb on - strand, within mqoat 2303.694 kb on + strand, within mqoat 2303.694 kb on + strand, within mqoat 2303.702 kb on - strand, within mqoat 2303.702 kb on - strand, within mqoat 2303.702 kb on - strand, within mqoat 2303.767 kb on + strand, within mqoat 2303.843 kb on - strand, within mqoat 2303.919 kb on + strandat 2303.955 kb on + strand, within mqoat 2304.051 kb on - strand, within mqoat 2304.051 kb on - strand, within mqoat 2304.174 kb on - strand, within mqoat 2304.174 kb on - strand, within mqoat 2304.237 kb on + strandat 2304.388 kb on + strand, within mqoat 2304.409 kb on + strand, within mqoat 2304.417 kb on - strand, within mqoat 2304.444 kb on - strand, within mqoat 2304.524 kb on + strand, within mqoat 2304.577 kb on + strand, within mqoat 2304.578 kb on + strand, within mqoat 2304.578 kb on + strand, within mqoat 2304.991 kb on + strandat 2305.038 kb on + strandat 2305.038 kb on + strandat 2305.045 kb on + strandat 2305.067 kb on - strandat 2305.102 kb on + strandat 2305.120 kb on - strandat 2305.289 kb on + strand, within yojIat 2305.302 kb on + strand, within yojIat 2305.390 kb on - strand, within yojIat 2305.439 kb on - strand, within yojIat 2305.529 kb on + strand, within yojIat 2305.616 kb on - strand, within yojIat 2305.720 kb on - strand, within yojIat 2305.720 kb on - strand, within yojIat 2305.747 kb on + strand, within yojIat 2305.747 kb on + strand, within yojIat 2305.760 kb on + strand, within yojIat 2305.763 kb on + strand, within yojI

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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2,302,294 + eco b2209 0.75 -0.4
2,302,310 - eco b2209 0.78 +2.3
2,302,522 + +0.8
2,302,748 + +0.6
2,302,763 + +1.0
2,302,763 + -0.8
2,302,773 + -2.2
2,303,223 - -2.3
2,303,225 + +1.0
2,303,226 + +1.8
2,303,244 + -1.2
2,303,346 - mqo b2210 0.13 -1.0
2,303,346 - mqo b2210 0.13 +0.6
2,303,421 - mqo b2210 0.18 -2.9
2,303,421 - mqo b2210 0.18 -2.2
2,303,579 - mqo b2210 0.27 -1.5
2,303,672 + mqo b2210 0.33 -0.1
2,303,680 - mqo b2210 0.33 +0.5
2,303,694 + mqo b2210 0.34 +3.7
2,303,694 + mqo b2210 0.34 +1.1
2,303,702 - mqo b2210 0.35 -0.9
2,303,702 - mqo b2210 0.35 -0.2
2,303,702 - mqo b2210 0.35 -1.1
2,303,767 + mqo b2210 0.39 -2.1
2,303,843 - mqo b2210 0.43 -0.6
2,303,919 + +0.6
2,303,955 + mqo b2210 0.50 -0.6
2,304,051 - mqo b2210 0.56 -0.4
2,304,051 - mqo b2210 0.56 -1.0
2,304,174 - mqo b2210 0.63 +0.0
2,304,174 - mqo b2210 0.63 +1.0
2,304,237 + +1.6
2,304,388 + mqo b2210 0.76 +0.8
2,304,409 + mqo b2210 0.78 -1.2
2,304,417 - mqo b2210 0.78 -2.1
2,304,444 - mqo b2210 0.80 -2.3
2,304,524 + mqo b2210 0.85 +0.4
2,304,577 + mqo b2210 0.88 -1.0
2,304,578 + mqo b2210 0.88 -0.4
2,304,578 + mqo b2210 0.88 -0.7
2,304,991 + +1.8
2,305,038 + +1.6
2,305,038 + +0.6
2,305,045 + +0.9
2,305,067 - -0.7
2,305,102 + +0.9
2,305,120 - -1.2
2,305,289 + yojI b2211 0.18 -2.0
2,305,302 + yojI b2211 0.19 -1.0
2,305,390 - yojI b2211 0.24 -4.3
2,305,439 - yojI b2211 0.27 -1.5
2,305,529 + yojI b2211 0.33 +0.3
2,305,616 - yojI b2211 0.38 -2.0
2,305,720 - yojI b2211 0.44 -1.1
2,305,720 - yojI b2211 0.44 -2.1
2,305,747 + yojI b2211 0.46 -0.8
2,305,747 + yojI b2211 0.46 +1.1
2,305,760 + yojI b2211 0.47 +1.1
2,305,763 + yojI b2211 0.47 -2.2

Or see this region's nucleotide sequence