Strain Fitness in Escherichia coli BW25113 around b1906

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyecR and ftn are separated by 170 nucleotidesftn and yecH are separated by 37 nucleotidesyecH and tyrP are separated by 190 nucleotides b1904: yecR - hypothetical protein (NCBI), at 1,986,246 to 1,986,569 yecR b1905: ftn - ferritin iron storage protein (cytoplasmic) (NCBI), at 1,986,740 to 1,987,237 ftn b1906: yecH - hypothetical protein (NCBI), at 1,987,275 to 1,987,514 yecH b1907: tyrP - tyrosine transporter (NCBI), at 1,987,705 to 1,988,916 tyrP Position (kb) 1987 1988Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1986.479 kb on + strand, within yecRat 1986.479 kb on + strand, within yecRat 1986.479 kb on + strand, within yecRat 1986.521 kb on + strand, within yecRat 1986.533 kb on - strand, within yecRat 1986.533 kb on - strand, within yecRat 1986.715 kb on + strandat 1986.722 kb on + strandat 1986.732 kb on + strandat 1986.738 kb on - strandat 1986.740 kb on + strandat 1986.743 kb on - strandat 1986.743 kb on - strandat 1986.747 kb on + strandat 1986.755 kb on - strandat 1986.755 kb on - strandat 1986.773 kb on + strandat 1986.788 kb on + strandat 1986.791 kb on - strand, within ftnat 1986.791 kb on - strand, within ftnat 1986.791 kb on - strand, within ftnat 1986.798 kb on + strand, within ftnat 1986.801 kb on - strand, within ftnat 1986.801 kb on - strand, within ftnat 1986.829 kb on + strand, within ftnat 1986.829 kb on + strand, within ftnat 1986.832 kb on - strand, within ftnat 1986.837 kb on - strand, within ftnat 1986.844 kb on - strand, within ftnat 1986.850 kb on - strand, within ftnat 1986.850 kb on - strand, within ftnat 1986.863 kb on + strand, within ftnat 1986.863 kb on + strand, within ftnat 1986.863 kb on + strand, within ftnat 1986.863 kb on + strand, within ftnat 1986.863 kb on + strand, within ftnat 1986.868 kb on + strand, within ftnat 1986.873 kb on + strand, within ftnat 1986.885 kb on - strand, within ftnat 1986.896 kb on + strand, within ftnat 1986.896 kb on + strand, within ftnat 1986.896 kb on + strand, within ftnat 1986.908 kb on - strand, within ftnat 1986.922 kb on + strand, within ftnat 1986.997 kb on + strand, within ftnat 1986.997 kb on + strand, within ftnat 1987.022 kb on + strand, within ftnat 1987.056 kb on + strand, within ftnat 1987.056 kb on + strand, within ftnat 1987.059 kb on - strand, within ftnat 1987.059 kb on - strand, within ftnat 1987.064 kb on - strand, within ftnat 1987.064 kb on - strand, within ftnat 1987.064 kb on - strand, within ftnat 1987.064 kb on - strand, within ftnat 1987.070 kb on + strand, within ftnat 1987.078 kb on - strand, within ftnat 1987.080 kb on + strand, within ftnat 1987.105 kb on + strand, within ftnat 1987.105 kb on + strand, within ftnat 1987.110 kb on + strand, within ftnat 1987.110 kb on + strand, within ftnat 1987.112 kb on + strand, within ftnat 1987.112 kb on + strand, within ftnat 1987.113 kb on - strand, within ftnat 1987.118 kb on - strand, within ftnat 1987.123 kb on - strand, within ftnat 1987.123 kb on - strand, within ftnat 1987.127 kb on + strand, within ftnat 1987.132 kb on - strand, within ftnat 1987.157 kb on + strand, within ftnat 1987.211 kb on + strandat 1987.581 kb on - strandat 1987.873 kb on + strand, within tyrPat 1987.873 kb on + strand, within tyrPat 1988.066 kb on - strand, within tyrPat 1988.183 kb on + strand, within tyrPat 1988.309 kb on - strand, within tyrPat 1988.344 kb on - strand, within tyrPat 1988.420 kb on + strand, within tyrPat 1988.420 kb on + strand, within tyrPat 1988.478 kb on + strand, within tyrP

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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1,986,479 + yecR b1904 0.72 +2.0
1,986,479 + yecR b1904 0.72 -1.6
1,986,479 + yecR b1904 0.72 -1.4
1,986,521 + yecR b1904 0.85 +2.2
1,986,533 - yecR b1904 0.89 +1.7
1,986,533 - yecR b1904 0.89 +1.7
1,986,715 + -0.6
1,986,722 + +0.2
1,986,732 + +1.7
1,986,738 - +0.7
1,986,740 + +0.7
1,986,743 - -0.3
1,986,743 - -0.1
1,986,747 + -1.1
1,986,755 - +0.7
1,986,755 - -0.6
1,986,773 + +1.7
1,986,788 + +1.7
1,986,791 - ftn b1905 0.10 +0.7
1,986,791 - ftn b1905 0.10 +1.7
1,986,791 - ftn b1905 0.10 +1.7
1,986,798 + ftn b1905 0.12 +0.2
1,986,801 - ftn b1905 0.12 +0.7
1,986,801 - ftn b1905 0.12 +2.7
1,986,829 + ftn b1905 0.18 +0.2
1,986,829 + ftn b1905 0.18 +0.7
1,986,832 - ftn b1905 0.18 +0.7
1,986,837 - ftn b1905 0.19 +5.5
1,986,844 - ftn b1905 0.21 +0.2
1,986,850 - ftn b1905 0.22 +1.7
1,986,850 - ftn b1905 0.22 +0.7
1,986,863 + ftn b1905 0.25 -1.7
1,986,863 + ftn b1905 0.25 +0.7
1,986,863 + ftn b1905 0.25 -2.4
1,986,863 + ftn b1905 0.25 -1.3
1,986,863 + ftn b1905 0.25 +0.2
1,986,868 + ftn b1905 0.26 -2.4
1,986,873 + ftn b1905 0.27 +0.2
1,986,885 - ftn b1905 0.29 +1.7
1,986,896 + ftn b1905 0.31 +0.2
1,986,896 + ftn b1905 0.31 +1.0
1,986,896 + ftn b1905 0.31 -1.4
1,986,908 - ftn b1905 0.34 +1.7
1,986,922 + ftn b1905 0.37 -0.1
1,986,997 + ftn b1905 0.52 -1.7
1,986,997 + ftn b1905 0.52 +3.3
1,987,022 + ftn b1905 0.57 +0.2
1,987,056 + ftn b1905 0.63 +0.9
1,987,056 + ftn b1905 0.63 +1.7
1,987,059 - ftn b1905 0.64 -1.3
1,987,059 - ftn b1905 0.64 -0.3
1,987,064 - ftn b1905 0.65 +4.7
1,987,064 - ftn b1905 0.65 +2.2
1,987,064 - ftn b1905 0.65 -0.6
1,987,064 - ftn b1905 0.65 -1.4
1,987,070 + ftn b1905 0.66 -0.5
1,987,078 - ftn b1905 0.68 +0.2
1,987,080 + ftn b1905 0.68 +2.3
1,987,105 + ftn b1905 0.73 -1.1
1,987,105 + ftn b1905 0.73 +0.6
1,987,110 + ftn b1905 0.74 -0.6
1,987,110 + ftn b1905 0.74 +0.2
1,987,112 + ftn b1905 0.75 -2.6
1,987,112 + ftn b1905 0.75 +1.6
1,987,113 - ftn b1905 0.75 +3.9
1,987,118 - ftn b1905 0.76 +0.0
1,987,123 - ftn b1905 0.77 +1.7
1,987,123 - ftn b1905 0.77 -1.1
1,987,127 + ftn b1905 0.78 -1.3
1,987,132 - ftn b1905 0.79 -2.2
1,987,157 + ftn b1905 0.84 +0.9
1,987,211 + +0.7
1,987,581 - -1.3
1,987,873 + tyrP b1907 0.14 +0.6
1,987,873 + tyrP b1907 0.14 +0.3
1,988,066 - tyrP b1907 0.30 -1.7
1,988,183 + tyrP b1907 0.39 +0.2
1,988,309 - tyrP b1907 0.50 -1.7
1,988,344 - tyrP b1907 0.53 -2.2
1,988,420 + tyrP b1907 0.59 -1.7
1,988,420 + tyrP b1907 0.59 +4.1
1,988,478 + tyrP b1907 0.64 -2.3

Or see this region's nucleotide sequence