Experiment: Ste41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycdO and ycdB are separated by 5 nucleotides ycdB and phoH are separated by 344 nucleotides
b1018: ycdO - hypothetical protein (NCBI), at 1,081,466 to 1,082,593
ycdO
b1019: ycdB - hypothetical protein (NCBI), at 1,082,599 to 1,083,870
ycdB
b1020: phoH - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 1,084,215 to 1,085,279
phoH
Position (kb)
1082
1083
1084 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1081.663 kb on + strand, within ycdO at 1081.663 kb on + strand, within ycdO at 1081.663 kb on - strand, within ycdO at 1081.663 kb on - strand, within ycdO at 1081.678 kb on - strand, within ycdO at 1081.852 kb on + strand, within ycdO at 1081.852 kb on + strand, within ycdO at 1081.908 kb on + strand, within ycdO at 1081.944 kb on + strand, within ycdO at 1081.979 kb on + strand, within ycdO at 1082.039 kb on + strand, within ycdO at 1082.039 kb on + strand, within ycdO at 1082.156 kb on - strand, within ycdO at 1082.179 kb on + strand, within ycdO at 1082.192 kb on - strand, within ycdO at 1082.382 kb on + strand, within ycdO at 1082.392 kb on + strand, within ycdO at 1082.515 kb on + strand at 1082.515 kb on + strand at 1082.594 kb on + strand at 1082.783 kb on - strand, within ycdB at 1082.787 kb on + strand, within ycdB at 1082.912 kb on + strand, within ycdB at 1083.109 kb on + strand, within ycdB at 1083.141 kb on - strand, within ycdB at 1083.141 kb on - strand, within ycdB at 1083.197 kb on + strand, within ycdB at 1083.212 kb on + strand, within ycdB at 1083.620 kb on + strand, within ycdB at 1083.620 kb on + strand, within ycdB at 1083.621 kb on + strand, within ycdB at 1083.650 kb on + strand, within ycdB at 1083.720 kb on - strand, within ycdB at 1083.787 kb on - strand at 1083.904 kb on + strand at 1084.000 kb on - strand at 1084.124 kb on - strand at 1084.407 kb on - strand, within phoH at 1084.446 kb on + strand, within phoH at 1084.494 kb on + strand, within phoH at 1084.561 kb on + strand, within phoH at 1084.620 kb on - strand, within phoH at 1084.765 kb on + strand, within phoH at 1084.860 kb on - strand, within phoH
Per-strain Table
Position Strand Gene LocusTag Fraction Ste41 remove 1,081,663 + ycdO b1018 0.17 +0.7 1,081,663 + ycdO b1018 0.17 +0.7 1,081,663 - ycdO b1018 0.17 +0.1 1,081,663 - ycdO b1018 0.17 +1.7 1,081,678 - ycdO b1018 0.19 +0.9 1,081,852 + ycdO b1018 0.34 -2.0 1,081,852 + ycdO b1018 0.34 -1.5 1,081,908 + ycdO b1018 0.39 +1.2 1,081,944 + ycdO b1018 0.42 +0.4 1,081,979 + ycdO b1018 0.45 +0.3 1,082,039 + ycdO b1018 0.51 -2.3 1,082,039 + ycdO b1018 0.51 +0.9 1,082,156 - ycdO b1018 0.61 +0.2 1,082,179 + ycdO b1018 0.63 -3.0 1,082,192 - ycdO b1018 0.64 +1.4 1,082,382 + ycdO b1018 0.81 -1.0 1,082,392 + ycdO b1018 0.82 -0.8 1,082,515 + +2.5 1,082,515 + -0.8 1,082,594 + +0.2 1,082,783 - ycdB b1019 0.14 +0.5 1,082,787 + ycdB b1019 0.15 -0.8 1,082,912 + ycdB b1019 0.25 -0.8 1,083,109 + ycdB b1019 0.40 -2.6 1,083,141 - ycdB b1019 0.43 +0.4 1,083,141 - ycdB b1019 0.43 -0.8 1,083,197 + ycdB b1019 0.47 +1.2 1,083,212 + ycdB b1019 0.48 -1.0 1,083,620 + ycdB b1019 0.80 -2.0 1,083,620 + ycdB b1019 0.80 -1.7 1,083,621 + ycdB b1019 0.80 +2.3 1,083,650 + ycdB b1019 0.83 +0.7 1,083,720 - ycdB b1019 0.88 -2.5 1,083,787 - -1.7 1,083,904 + -1.6 1,084,000 - -1.3 1,084,124 - -2.4 1,084,407 - phoH b1020 0.18 +0.7 1,084,446 + phoH b1020 0.22 +0.2 1,084,494 + phoH b1020 0.26 +0.9 1,084,561 + phoH b1020 0.32 -0.8 1,084,620 - phoH b1020 0.38 -2.8 1,084,765 + phoH b1020 0.52 +0.7 1,084,860 - phoH b1020 0.61 +0.2
Or see this region's nucleotide sequence