Strain Fitness in Escherichia coli BW25113 around b1521

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1520 and uxaB are separated by 206 nucleotidesuxaB and yneF are separated by 226 nucleotides b1520: b1520 - orf, hypothetical protein (VIMSS), at 1,606,132 to 1,607,046 b1520 b1521: uxaB - tagaturonate reductase (NCBI), at 1,607,253 to 1,608,704 uxaB b1522: yneF - predicted diguanylate cyclase (NCBI), at 1,608,931 to 1,609,878 yneF Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1606.520 kb on - strand, within b1520at 1606.520 kb on - strand, within b1520at 1606.713 kb on + strand, within b1520at 1606.819 kb on + strand, within b1520at 1606.881 kb on + strand, within b1520at 1606.940 kb on + strand, within b1520at 1606.986 kb on + strandat 1606.986 kb on + strandat 1607.077 kb on + strandat 1607.138 kb on - strandat 1607.500 kb on + strand, within uxaBat 1607.500 kb on + strand, within uxaBat 1607.552 kb on - strand, within uxaBat 1607.552 kb on - strand, within uxaBat 1607.587 kb on + strand, within uxaBat 1607.807 kb on - strand, within uxaBat 1607.836 kb on + strand, within uxaBat 1607.936 kb on + strand, within uxaBat 1608.074 kb on + strand, within uxaBat 1608.074 kb on + strand, within uxaBat 1608.119 kb on + strand, within uxaBat 1608.272 kb on - strand, within uxaBat 1608.469 kb on - strand, within uxaBat 1608.664 kb on - strandat 1608.962 kb on - strandat 1608.994 kb on + strandat 1609.041 kb on - strand, within yneFat 1609.234 kb on - strand, within yneFat 1609.408 kb on - strand, within yneF

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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1,606,520 - b1520 b1520 0.42 -1.4
1,606,520 - b1520 b1520 0.42 +1.9
1,606,713 + b1520 b1520 0.63 -1.7
1,606,819 + b1520 b1520 0.75 +1.4
1,606,881 + b1520 b1520 0.82 +0.7
1,606,940 + b1520 b1520 0.88 -1.1
1,606,986 + -0.3
1,606,986 + -0.9
1,607,077 + +3.2
1,607,138 - -1.8
1,607,500 + uxaB b1521 0.17 +0.7
1,607,500 + uxaB b1521 0.17 +0.3
1,607,552 - uxaB b1521 0.21 -2.2
1,607,552 - uxaB b1521 0.21 +3.1
1,607,587 + uxaB b1521 0.23 +0.2
1,607,807 - uxaB b1521 0.38 +1.0
1,607,836 + uxaB b1521 0.40 -0.8
1,607,936 + uxaB b1521 0.47 -2.4
1,608,074 + uxaB b1521 0.57 +2.5
1,608,074 + uxaB b1521 0.57 -1.1
1,608,119 + uxaB b1521 0.60 -0.8
1,608,272 - uxaB b1521 0.70 +0.5
1,608,469 - uxaB b1521 0.84 -2.4
1,608,664 - -2.7
1,608,962 - -0.4
1,608,994 + -1.1
1,609,041 - yneF b1522 0.12 -1.4
1,609,234 - yneF b1522 0.32 -1.2
1,609,408 - yneF b1522 0.50 -2.8

Or see this region's nucleotide sequence