Strain Fitness in Escherichia coli BW25113 around b3687
Experiment: Ste41
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ste41 |
---|---|---|---|---|---|
remove | |||||
3,864,039 | + | yidE | b3685 | 0.84 | -2.5 |
3,864,053 | - | yidE | b3685 | 0.85 | +1.2 |
3,864,059 | + | yidE | b3685 | 0.86 | +1.1 |
3,864,087 | - | yidE | b3685 | 0.87 | +0.1 |
3,864,130 | - | +1.4 | |||
3,864,140 | - | -0.8 | |||
3,864,140 | - | -0.6 | |||
3,864,170 | + | -2.9 | |||
3,864,186 | - | -0.2 | |||
3,864,186 | - | -0.2 | |||
3,864,201 | + | -2.7 | |||
3,864,214 | - | +1.5 | |||
3,864,214 | - | +1.0 | |||
3,864,239 | + | +2.0 | |||
3,864,239 | + | +0.8 | |||
3,864,269 | - | +0.4 | |||
3,864,275 | + | +0.8 | |||
3,864,283 | - | -3.3 | |||
3,864,284 | + | -2.0 | |||
3,864,289 | - | -4.5 | |||
3,864,292 | - | +2.4 | |||
3,864,292 | - | +1.4 | |||
3,864,295 | + | +0.2 | |||
3,864,376 | + | +0.8 | |||
3,864,433 | + | +1.5 | |||
3,864,488 | - | -2.0 | |||
3,864,488 | - | +1.2 | |||
3,864,510 | + | -2.3 | |||
3,864,545 | + | ibpB | b3686 | 0.12 | +1.3 |
3,864,569 | - | ibpB | b3686 | 0.18 | -0.6 |
3,864,583 | - | ibpB | b3686 | 0.21 | +0.6 |
3,864,626 | + | ibpB | b3686 | 0.31 | -1.1 |
3,864,719 | + | ibpB | b3686 | 0.53 | -2.1 |
3,864,719 | + | ibpB | b3686 | 0.53 | -3.0 |
3,864,727 | - | ibpB | b3686 | 0.55 | -2.3 |
3,864,727 | - | ibpB | b3686 | 0.55 | -1.8 |
3,864,733 | + | ibpB | b3686 | 0.56 | -2.5 |
3,864,778 | - | ibpB | b3686 | 0.67 | -3.1 |
3,864,778 | - | ibpB | b3686 | 0.67 | -1.6 |
3,864,778 | - | ibpB | b3686 | 0.67 | -1.5 |
3,864,789 | - | ibpB | b3686 | 0.69 | +0.7 |
3,864,812 | - | ibpB | b3686 | 0.75 | -1.8 |
3,864,856 | + | ibpB | b3686 | 0.85 | +1.0 |
3,864,864 | - | ibpB | b3686 | 0.87 | -1.0 |
3,864,866 | + | ibpB | b3686 | 0.87 | -3.2 |
3,864,870 | + | ibpB | b3686 | 0.88 | -0.9 |
3,865,029 | - | +0.3 | |||
3,865,029 | - | -2.2 | |||
3,865,029 | - | -2.2 | |||
3,865,090 | + | ibpA | b3687 | 0.14 | -1.6 |
3,865,090 | + | ibpA | b3687 | 0.14 | -3.4 |
3,865,090 | + | ibpA | b3687 | 0.14 | -1.6 |
3,865,090 | + | ibpA | b3687 | 0.14 | +1.1 |
3,865,090 | + | ibpA | b3687 | 0.14 | +1.3 |
3,865,098 | - | ibpA | b3687 | 0.16 | -1.6 |
3,865,098 | - | ibpA | b3687 | 0.16 | -3.2 |
3,865,098 | - | ibpA | b3687 | 0.16 | +1.1 |
3,865,112 | + | ibpA | b3687 | 0.19 | -0.7 |
3,865,113 | - | ibpA | b3687 | 0.20 | +1.2 |
3,865,120 | - | ibpA | b3687 | 0.21 | +0.4 |
3,865,120 | - | ibpA | b3687 | 0.21 | -1.6 |
3,865,120 | - | ibpA | b3687 | 0.21 | -1.6 |
3,865,180 | + | ibpA | b3687 | 0.36 | -2.5 |
3,865,182 | - | ibpA | b3687 | 0.36 | -2.2 |
3,865,184 | + | ibpA | b3687 | 0.37 | -1.1 |
3,865,210 | - | ibpA | b3687 | 0.43 | +0.0 |
3,865,217 | + | ibpA | b3687 | 0.45 | +2.0 |
3,865,233 | - | ibpA | b3687 | 0.49 | +1.5 |
3,865,233 | - | ibpA | b3687 | 0.49 | +1.4 |
3,865,240 | + | ibpA | b3687 | 0.50 | +0.7 |
3,865,241 | + | ibpA | b3687 | 0.50 | +2.9 |
3,865,244 | - | ibpA | b3687 | 0.51 | -3.3 |
3,865,244 | - | ibpA | b3687 | 0.51 | +0.5 |
3,865,253 | + | ibpA | b3687 | 0.53 | +1.9 |
3,865,253 | - | ibpA | b3687 | 0.53 | -0.2 |
3,865,325 | + | ibpA | b3687 | 0.71 | -0.9 |
3,865,325 | + | ibpA | b3687 | 0.71 | -2.7 |
3,865,330 | + | ibpA | b3687 | 0.72 | -2.0 |
3,865,332 | + | ibpA | b3687 | 0.72 | +1.8 |
3,865,332 | + | ibpA | b3687 | 0.72 | +1.0 |
3,865,382 | + | ibpA | b3687 | 0.85 | +0.6 |
3,865,389 | - | ibpA | b3687 | 0.86 | +0.4 |
3,865,424 | - | -2.7 | |||
3,865,428 | - | -0.7 | |||
3,865,481 | - | -1.5 | |||
3,865,481 | - | -0.1 | |||
3,865,505 | + | -1.6 | |||
3,865,613 | + | +0.9 | |||
3,865,613 | + | +2.0 | |||
3,865,615 | + | -3.2 | |||
3,865,621 | - | -3.2 | |||
3,865,630 | - | +2.1 | |||
3,865,637 | - | -1.2 | |||
3,865,637 | - | +3.6 | |||
3,865,674 | - | -1.0 | |||
3,865,711 | - | +0.6 | |||
3,865,713 | + | +0.7 | |||
3,865,713 | - | -0.6 | |||
3,865,757 | + | -1.5 | |||
3,865,763 | + | -1.5 | |||
3,865,791 | + | yidQ | b3688 | 0.12 | -2.5 |
3,865,799 | - | yidQ | b3688 | 0.14 | +0.4 |
3,865,813 | + | yidQ | b3688 | 0.19 | -2.5 |
3,865,813 | + | yidQ | b3688 | 0.19 | -2.5 |
3,865,821 | - | yidQ | b3688 | 0.21 | -2.1 |
3,865,821 | - | yidQ | b3688 | 0.21 | -3.2 |
3,865,825 | + | yidQ | b3688 | 0.22 | -1.2 |
3,865,833 | - | yidQ | b3688 | 0.25 | -1.4 |
3,865,957 | - | yidQ | b3688 | 0.62 | +0.8 |
3,865,969 | + | yidQ | b3688 | 0.65 | -0.6 |
3,865,969 | + | yidQ | b3688 | 0.65 | +0.4 |
3,865,969 | + | yidQ | b3688 | 0.65 | -0.3 |
3,865,974 | + | yidQ | b3688 | 0.67 | -2.0 |
3,865,974 | + | yidQ | b3688 | 0.67 | -1.6 |
3,865,998 | + | yidQ | b3688 | 0.74 | +0.0 |
3,866,112 | - | -3.9 | |||
3,866,112 | - | +0.1 | |||
3,866,124 | + | -1.5 | |||
3,866,124 | + | +0.8 | |||
3,866,125 | + | +0.4 | |||
3,866,135 | + | +0.0 | |||
3,866,135 | + | +1.8 | |||
3,866,162 | - | -1.8 | |||
3,866,162 | - | -4.1 | |||
3,866,174 | - | +0.2 | |||
3,866,237 | + | yidR | b3689 | 0.12 | +1.7 |
3,866,237 | - | yidR | b3689 | 0.12 | -3.2 |
3,866,308 | + | yidR | b3689 | 0.18 | -2.0 |
3,866,308 | + | yidR | b3689 | 0.18 | -1.0 |
3,866,320 | + | yidR | b3689 | 0.19 | -1.2 |
3,866,321 | - | yidR | b3689 | 0.19 | -1.2 |
3,866,321 | - | yidR | b3689 | 0.19 | -2.9 |
3,866,321 | - | yidR | b3689 | 0.19 | +0.9 |
3,866,323 | + | yidR | b3689 | 0.19 | -2.3 |
3,866,359 | - | yidR | b3689 | 0.22 | +1.3 |
3,866,359 | - | yidR | b3689 | 0.22 | -2.3 |
3,866,361 | + | yidR | b3689 | 0.22 | -2.2 |
3,866,373 | + | yidR | b3689 | 0.23 | -2.5 |
3,866,410 | - | yidR | b3689 | 0.26 | +1.4 |
3,866,441 | - | yidR | b3689 | 0.29 | +1.5 |
3,866,443 | + | yidR | b3689 | 0.29 | -2.5 |
3,866,443 | + | yidR | b3689 | 0.29 | +2.1 |
Or see this region's nucleotide sequence