Strain Fitness in Escherichia coli BW25113 around b3687

Experiment: Ste41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyidE and ibpB are separated by 195 nucleotidesibpB and ibpA are separated by 111 nucleotidesibpA and yidQ are separated by 305 nucleotidesyidQ and yidR are separated by 1 nucleotides b3685: yidE - putative transport protein (VIMSS), at 3,862,635 to 3,864,296 yidE b3686: ibpB - heat shock chaperone (NCBI), at 3,864,492 to 3,864,920 ibpB b3687: ibpA - heat shock chaperone (NCBI), at 3,865,032 to 3,865,445 ibpA b3688: yidQ - orf, hypothetical protein (VIMSS), at 3,865,751 to 3,866,083 yidQ b3689: yidR - conserved protein (NCBI), at 3,866,085 to 3,867,332 yidR Position (kb) 3865 3866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3864.039 kb on + strand, within yidEat 3864.053 kb on - strand, within yidEat 3864.059 kb on + strand, within yidEat 3864.087 kb on - strand, within yidEat 3864.130 kb on - strandat 3864.140 kb on - strandat 3864.140 kb on - strandat 3864.170 kb on + strandat 3864.186 kb on - strandat 3864.186 kb on - strandat 3864.201 kb on + strandat 3864.214 kb on - strandat 3864.214 kb on - strandat 3864.239 kb on + strandat 3864.239 kb on + strandat 3864.269 kb on - strandat 3864.275 kb on + strandat 3864.283 kb on - strandat 3864.284 kb on + strandat 3864.289 kb on - strandat 3864.292 kb on - strandat 3864.292 kb on - strandat 3864.295 kb on + strandat 3864.376 kb on + strandat 3864.433 kb on + strandat 3864.488 kb on - strandat 3864.488 kb on - strandat 3864.510 kb on + strandat 3864.545 kb on + strand, within ibpBat 3864.569 kb on - strand, within ibpBat 3864.583 kb on - strand, within ibpBat 3864.626 kb on + strand, within ibpBat 3864.719 kb on + strand, within ibpBat 3864.719 kb on + strand, within ibpBat 3864.727 kb on - strand, within ibpBat 3864.727 kb on - strand, within ibpBat 3864.733 kb on + strand, within ibpBat 3864.778 kb on - strand, within ibpBat 3864.778 kb on - strand, within ibpBat 3864.778 kb on - strand, within ibpBat 3864.789 kb on - strand, within ibpBat 3864.812 kb on - strand, within ibpBat 3864.856 kb on + strand, within ibpBat 3864.864 kb on - strand, within ibpBat 3864.866 kb on + strand, within ibpBat 3864.870 kb on + strand, within ibpBat 3865.029 kb on - strandat 3865.029 kb on - strandat 3865.029 kb on - strandat 3865.090 kb on + strand, within ibpAat 3865.090 kb on + strand, within ibpAat 3865.090 kb on + strand, within ibpAat 3865.090 kb on + strand, within ibpAat 3865.090 kb on + strand, within ibpAat 3865.098 kb on - strand, within ibpAat 3865.098 kb on - strand, within ibpAat 3865.098 kb on - strand, within ibpAat 3865.112 kb on + strand, within ibpAat 3865.113 kb on - strand, within ibpAat 3865.120 kb on - strand, within ibpAat 3865.120 kb on - strand, within ibpAat 3865.120 kb on - strand, within ibpAat 3865.180 kb on + strand, within ibpAat 3865.182 kb on - strand, within ibpAat 3865.184 kb on + strand, within ibpAat 3865.210 kb on - strand, within ibpAat 3865.217 kb on + strand, within ibpAat 3865.233 kb on - strand, within ibpAat 3865.233 kb on - strand, within ibpAat 3865.240 kb on + strand, within ibpAat 3865.241 kb on + strand, within ibpAat 3865.244 kb on - strand, within ibpAat 3865.244 kb on - strand, within ibpAat 3865.253 kb on + strand, within ibpAat 3865.253 kb on - strand, within ibpAat 3865.325 kb on + strand, within ibpAat 3865.325 kb on + strand, within ibpAat 3865.330 kb on + strand, within ibpAat 3865.332 kb on + strand, within ibpAat 3865.332 kb on + strand, within ibpAat 3865.382 kb on + strand, within ibpAat 3865.389 kb on - strand, within ibpAat 3865.424 kb on - strandat 3865.428 kb on - strandat 3865.481 kb on - strandat 3865.481 kb on - strandat 3865.505 kb on + strandat 3865.613 kb on + strandat 3865.613 kb on + strandat 3865.615 kb on + strandat 3865.621 kb on - strandat 3865.630 kb on - strandat 3865.637 kb on - strandat 3865.637 kb on - strandat 3865.674 kb on - strandat 3865.711 kb on - strandat 3865.713 kb on + strandat 3865.713 kb on - strandat 3865.757 kb on + strandat 3865.763 kb on + strandat 3865.791 kb on + strand, within yidQat 3865.799 kb on - strand, within yidQat 3865.813 kb on + strand, within yidQat 3865.813 kb on + strand, within yidQat 3865.821 kb on - strand, within yidQat 3865.821 kb on - strand, within yidQat 3865.825 kb on + strand, within yidQat 3865.833 kb on - strand, within yidQat 3865.957 kb on - strand, within yidQat 3865.969 kb on + strand, within yidQat 3865.969 kb on + strand, within yidQat 3865.969 kb on + strand, within yidQat 3865.974 kb on + strand, within yidQat 3865.974 kb on + strand, within yidQat 3865.998 kb on + strand, within yidQat 3866.112 kb on - strandat 3866.112 kb on - strandat 3866.124 kb on + strandat 3866.124 kb on + strandat 3866.125 kb on + strandat 3866.135 kb on + strandat 3866.135 kb on + strandat 3866.162 kb on - strandat 3866.162 kb on - strandat 3866.174 kb on - strandat 3866.237 kb on + strand, within yidRat 3866.237 kb on - strand, within yidRat 3866.308 kb on + strand, within yidRat 3866.308 kb on + strand, within yidRat 3866.320 kb on + strand, within yidRat 3866.321 kb on - strand, within yidRat 3866.321 kb on - strand, within yidRat 3866.321 kb on - strand, within yidRat 3866.323 kb on + strand, within yidRat 3866.359 kb on - strand, within yidRat 3866.359 kb on - strand, within yidRat 3866.361 kb on + strand, within yidRat 3866.373 kb on + strand, within yidRat 3866.410 kb on - strand, within yidRat 3866.441 kb on - strand, within yidRat 3866.443 kb on + strand, within yidRat 3866.443 kb on + strand, within yidR

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste41
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3,864,039 + yidE b3685 0.84 -2.5
3,864,053 - yidE b3685 0.85 +1.2
3,864,059 + yidE b3685 0.86 +1.1
3,864,087 - yidE b3685 0.87 +0.1
3,864,130 - +1.4
3,864,140 - -0.8
3,864,140 - -0.6
3,864,170 + -2.9
3,864,186 - -0.2
3,864,186 - -0.2
3,864,201 + -2.7
3,864,214 - +1.5
3,864,214 - +1.0
3,864,239 + +2.0
3,864,239 + +0.8
3,864,269 - +0.4
3,864,275 + +0.8
3,864,283 - -3.3
3,864,284 + -2.0
3,864,289 - -4.5
3,864,292 - +2.4
3,864,292 - +1.4
3,864,295 + +0.2
3,864,376 + +0.8
3,864,433 + +1.5
3,864,488 - -2.0
3,864,488 - +1.2
3,864,510 + -2.3
3,864,545 + ibpB b3686 0.12 +1.3
3,864,569 - ibpB b3686 0.18 -0.6
3,864,583 - ibpB b3686 0.21 +0.6
3,864,626 + ibpB b3686 0.31 -1.1
3,864,719 + ibpB b3686 0.53 -2.1
3,864,719 + ibpB b3686 0.53 -3.0
3,864,727 - ibpB b3686 0.55 -2.3
3,864,727 - ibpB b3686 0.55 -1.8
3,864,733 + ibpB b3686 0.56 -2.5
3,864,778 - ibpB b3686 0.67 -3.1
3,864,778 - ibpB b3686 0.67 -1.6
3,864,778 - ibpB b3686 0.67 -1.5
3,864,789 - ibpB b3686 0.69 +0.7
3,864,812 - ibpB b3686 0.75 -1.8
3,864,856 + ibpB b3686 0.85 +1.0
3,864,864 - ibpB b3686 0.87 -1.0
3,864,866 + ibpB b3686 0.87 -3.2
3,864,870 + ibpB b3686 0.88 -0.9
3,865,029 - +0.3
3,865,029 - -2.2
3,865,029 - -2.2
3,865,090 + ibpA b3687 0.14 -1.6
3,865,090 + ibpA b3687 0.14 -3.4
3,865,090 + ibpA b3687 0.14 -1.6
3,865,090 + ibpA b3687 0.14 +1.1
3,865,090 + ibpA b3687 0.14 +1.3
3,865,098 - ibpA b3687 0.16 -1.6
3,865,098 - ibpA b3687 0.16 -3.2
3,865,098 - ibpA b3687 0.16 +1.1
3,865,112 + ibpA b3687 0.19 -0.7
3,865,113 - ibpA b3687 0.20 +1.2
3,865,120 - ibpA b3687 0.21 +0.4
3,865,120 - ibpA b3687 0.21 -1.6
3,865,120 - ibpA b3687 0.21 -1.6
3,865,180 + ibpA b3687 0.36 -2.5
3,865,182 - ibpA b3687 0.36 -2.2
3,865,184 + ibpA b3687 0.37 -1.1
3,865,210 - ibpA b3687 0.43 +0.0
3,865,217 + ibpA b3687 0.45 +2.0
3,865,233 - ibpA b3687 0.49 +1.5
3,865,233 - ibpA b3687 0.49 +1.4
3,865,240 + ibpA b3687 0.50 +0.7
3,865,241 + ibpA b3687 0.50 +2.9
3,865,244 - ibpA b3687 0.51 -3.3
3,865,244 - ibpA b3687 0.51 +0.5
3,865,253 + ibpA b3687 0.53 +1.9
3,865,253 - ibpA b3687 0.53 -0.2
3,865,325 + ibpA b3687 0.71 -0.9
3,865,325 + ibpA b3687 0.71 -2.7
3,865,330 + ibpA b3687 0.72 -2.0
3,865,332 + ibpA b3687 0.72 +1.8
3,865,332 + ibpA b3687 0.72 +1.0
3,865,382 + ibpA b3687 0.85 +0.6
3,865,389 - ibpA b3687 0.86 +0.4
3,865,424 - -2.7
3,865,428 - -0.7
3,865,481 - -1.5
3,865,481 - -0.1
3,865,505 + -1.6
3,865,613 + +0.9
3,865,613 + +2.0
3,865,615 + -3.2
3,865,621 - -3.2
3,865,630 - +2.1
3,865,637 - -1.2
3,865,637 - +3.6
3,865,674 - -1.0
3,865,711 - +0.6
3,865,713 + +0.7
3,865,713 - -0.6
3,865,757 + -1.5
3,865,763 + -1.5
3,865,791 + yidQ b3688 0.12 -2.5
3,865,799 - yidQ b3688 0.14 +0.4
3,865,813 + yidQ b3688 0.19 -2.5
3,865,813 + yidQ b3688 0.19 -2.5
3,865,821 - yidQ b3688 0.21 -2.1
3,865,821 - yidQ b3688 0.21 -3.2
3,865,825 + yidQ b3688 0.22 -1.2
3,865,833 - yidQ b3688 0.25 -1.4
3,865,957 - yidQ b3688 0.62 +0.8
3,865,969 + yidQ b3688 0.65 -0.6
3,865,969 + yidQ b3688 0.65 +0.4
3,865,969 + yidQ b3688 0.65 -0.3
3,865,974 + yidQ b3688 0.67 -2.0
3,865,974 + yidQ b3688 0.67 -1.6
3,865,998 + yidQ b3688 0.74 +0.0
3,866,112 - -3.9
3,866,112 - +0.1
3,866,124 + -1.5
3,866,124 + +0.8
3,866,125 + +0.4
3,866,135 + +0.0
3,866,135 + +1.8
3,866,162 - -1.8
3,866,162 - -4.1
3,866,174 - +0.2
3,866,237 + yidR b3689 0.12 +1.7
3,866,237 - yidR b3689 0.12 -3.2
3,866,308 + yidR b3689 0.18 -2.0
3,866,308 + yidR b3689 0.18 -1.0
3,866,320 + yidR b3689 0.19 -1.2
3,866,321 - yidR b3689 0.19 -1.2
3,866,321 - yidR b3689 0.19 -2.9
3,866,321 - yidR b3689 0.19 +0.9
3,866,323 + yidR b3689 0.19 -2.3
3,866,359 - yidR b3689 0.22 +1.3
3,866,359 - yidR b3689 0.22 -2.3
3,866,361 + yidR b3689 0.22 -2.2
3,866,373 + yidR b3689 0.23 -2.5
3,866,410 - yidR b3689 0.26 +1.4
3,866,441 - yidR b3689 0.29 +1.5
3,866,443 + yidR b3689 0.29 -2.5
3,866,443 + yidR b3689 0.29 +2.1

Or see this region's nucleotide sequence