Experiment: Ste41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepD and ybdA are separated by 110 nucleotides ybdA and fepB are separated by 3 nucleotides
b0590: fepD - iron-enterobactin transporter subunit (NCBI), at 620,408 to 621,412
fepD
b0591: ybdA - predicted transporter (NCBI), at 621,523 to 622,773
ybdA
b0592: fepB - iron-enterobactin transporter subunit (NCBI), at 622,777 to 623,733
fepB
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 620.634 kb on - strand, within fepD at 620.653 kb on - strand, within fepD at 620.653 kb on - strand, within fepD at 620.664 kb on - strand, within fepD at 620.672 kb on - strand, within fepD at 620.728 kb on - strand, within fepD at 620.749 kb on + strand, within fepD at 620.749 kb on + strand, within fepD at 620.749 kb on + strand, within fepD at 620.780 kb on - strand, within fepD at 620.808 kb on + strand, within fepD at 620.808 kb on + strand, within fepD at 620.892 kb on + strand, within fepD at 620.900 kb on - strand, within fepD at 620.964 kb on - strand, within fepD at 620.964 kb on - strand, within fepD at 620.970 kb on + strand, within fepD at 620.970 kb on + strand, within fepD at 621.018 kb on - strand, within fepD at 621.228 kb on - strand, within fepD at 621.295 kb on - strand, within fepD at 621.295 kb on - strand, within fepD at 621.331 kb on + strand at 621.474 kb on - strand at 621.474 kb on - strand at 621.487 kb on - strand at 621.608 kb on + strand at 621.654 kb on - strand, within ybdA at 621.727 kb on - strand, within ybdA at 621.819 kb on + strand, within ybdA at 621.846 kb on + strand, within ybdA at 621.846 kb on + strand, within ybdA at 621.966 kb on + strand, within ybdA at 622.236 kb on + strand, within ybdA at 622.246 kb on + strand, within ybdA at 622.255 kb on - strand, within ybdA at 622.255 kb on - strand, within ybdA at 622.365 kb on + strand, within ybdA at 622.365 kb on + strand, within ybdA at 622.409 kb on - strand, within ybdA at 622.434 kb on + strand, within ybdA at 622.441 kb on - strand, within ybdA at 622.441 kb on - strand, within ybdA at 622.472 kb on + strand, within ybdA at 622.472 kb on + strand, within ybdA at 622.491 kb on + strand, within ybdA at 622.596 kb on + strand, within ybdA at 622.596 kb on + strand, within ybdA at 622.611 kb on - strand, within ybdA at 622.611 kb on - strand, within ybdA at 622.615 kb on + strand, within ybdA at 622.615 kb on + strand, within ybdA at 622.801 kb on - strand at 622.819 kb on + strand at 622.819 kb on + strand at 622.847 kb on - strand at 622.875 kb on + strand, within fepB at 622.875 kb on + strand, within fepB at 622.899 kb on + strand, within fepB at 622.917 kb on + strand, within fepB at 622.923 kb on + strand, within fepB at 622.958 kb on + strand, within fepB at 623.019 kb on + strand, within fepB at 623.019 kb on + strand, within fepB at 623.028 kb on - strand, within fepB at 623.028 kb on - strand, within fepB at 623.032 kb on + strand, within fepB at 623.119 kb on + strand, within fepB at 623.140 kb on - strand, within fepB at 623.148 kb on - strand, within fepB at 623.148 kb on - strand, within fepB at 623.199 kb on - strand, within fepB at 623.253 kb on - strand, within fepB at 623.341 kb on - strand, within fepB at 623.405 kb on - strand, within fepB at 623.405 kb on - strand, within fepB at 623.426 kb on + strand, within fepB at 623.426 kb on + strand, within fepB at 623.458 kb on - strand, within fepB at 623.458 kb on - strand, within fepB at 623.467 kb on - strand, within fepB at 623.467 kb on - strand, within fepB at 623.470 kb on - strand, within fepB at 623.470 kb on - strand, within fepB at 623.563 kb on + strand, within fepB at 623.576 kb on - strand, within fepB at 623.576 kb on - strand, within fepB at 623.591 kb on - strand, within fepB at 623.591 kb on - strand, within fepB at 623.610 kb on + strand, within fepB at 623.672 kb on + strand at 623.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ste41 remove 620,634 - fepD b0590 0.22 +1.6 620,653 - fepD b0590 0.24 +0.3 620,653 - fepD b0590 0.24 -1.2 620,664 - fepD b0590 0.25 -0.7 620,672 - fepD b0590 0.26 +0.1 620,728 - fepD b0590 0.32 -2.5 620,749 + fepD b0590 0.34 +0.3 620,749 + fepD b0590 0.34 -0.5 620,749 + fepD b0590 0.34 +0.9 620,780 - fepD b0590 0.37 +0.0 620,808 + fepD b0590 0.40 -1.0 620,808 + fepD b0590 0.40 +0.6 620,892 + fepD b0590 0.48 +0.0 620,900 - fepD b0590 0.49 +0.5 620,964 - fepD b0590 0.55 +0.5 620,964 - fepD b0590 0.55 +1.7 620,970 + fepD b0590 0.56 +1.9 620,970 + fepD b0590 0.56 -0.9 621,018 - fepD b0590 0.61 -1.9 621,228 - fepD b0590 0.82 -1.3 621,295 - fepD b0590 0.88 -1.3 621,295 - fepD b0590 0.88 -2.3 621,331 + -3.4 621,474 - +1.5 621,474 - +2.8 621,487 - -2.6 621,608 + -0.1 621,654 - ybdA b0591 0.10 +1.8 621,727 - ybdA b0591 0.16 +0.1 621,819 + ybdA b0591 0.24 +2.5 621,846 + ybdA b0591 0.26 +0.6 621,846 + ybdA b0591 0.26 +1.9 621,966 + ybdA b0591 0.35 +0.0 622,236 + ybdA b0591 0.57 +1.6 622,246 + ybdA b0591 0.58 -1.0 622,255 - ybdA b0591 0.59 -2.8 622,255 - ybdA b0591 0.59 +2.1 622,365 + ybdA b0591 0.67 -1.4 622,365 + ybdA b0591 0.67 -2.2 622,409 - ybdA b0591 0.71 +2.4 622,434 + ybdA b0591 0.73 +0.5 622,441 - ybdA b0591 0.73 +1.5 622,441 - ybdA b0591 0.73 -2.2 622,472 + ybdA b0591 0.76 -3.0 622,472 + ybdA b0591 0.76 +0.7 622,491 + ybdA b0591 0.77 +1.4 622,596 + ybdA b0591 0.86 -1.0 622,596 + ybdA b0591 0.86 +0.0 622,611 - ybdA b0591 0.87 -1.4 622,611 - ybdA b0591 0.87 -0.4 622,615 + ybdA b0591 0.87 -1.6 622,615 + ybdA b0591 0.87 +1.9 622,801 - +3.5 622,819 + -2.2 622,819 + +2.1 622,847 - +1.6 622,875 + fepB b0592 0.10 +1.8 622,875 + fepB b0592 0.10 +3.1 622,899 + fepB b0592 0.13 +0.6 622,917 + fepB b0592 0.15 +1.4 622,923 + fepB b0592 0.15 -0.7 622,958 + fepB b0592 0.19 -2.8 623,019 + fepB b0592 0.25 -0.4 623,019 + fepB b0592 0.25 +0.9 623,028 - fepB b0592 0.26 +0.1 623,028 - fepB b0592 0.26 +0.9 623,032 + fepB b0592 0.27 -3.2 623,119 + fepB b0592 0.36 +0.8 623,140 - fepB b0592 0.38 +3.1 623,148 - fepB b0592 0.39 -1.0 623,148 - fepB b0592 0.39 -1.2 623,199 - fepB b0592 0.44 -0.8 623,253 - fepB b0592 0.50 +0.1 623,341 - fepB b0592 0.59 +0.6 623,405 - fepB b0592 0.66 -1.6 623,405 - fepB b0592 0.66 -1.6 623,426 + fepB b0592 0.68 +1.4 623,426 + fepB b0592 0.68 +0.9 623,458 - fepB b0592 0.71 -2.1 623,458 - fepB b0592 0.71 -1.7 623,467 - fepB b0592 0.72 +0.6 623,467 - fepB b0592 0.72 +1.2 623,470 - fepB b0592 0.72 -2.1 623,470 - fepB b0592 0.72 +1.4 623,563 + fepB b0592 0.82 +0.7 623,576 - fepB b0592 0.83 -1.4 623,576 - fepB b0592 0.83 -1.0 623,591 - fepB b0592 0.85 +1.8 623,591 - fepB b0592 0.85 +1.4 623,610 + fepB b0592 0.87 -2.5 623,672 + +2.0 623,708 + -0.3
Or see this region's nucleotide sequence