Strain Fitness in Escherichia coli BW25113 around b3124

Experiment: Control_TnC

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnpB and garK are separated by 32 nucleotidesgarK and garR are separated by 96 nucleotides b3123: rnpB - RNase P RNA component precursor RnpB (NCBI), at 3,268,238 to 3,268,614 rnpB b3124: garK - glycerate kinase I (RefSeq), at 3,268,647 to 3,269,792 garK b3125: garR - tartronate semialdehyde reductase (RefSeq), at 3,269,889 to 3,270,773 garR Position (kb) 3268 3269 3270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3267.683 kb on - strandat 3267.683 kb on - strandat 3267.683 kb on - strandat 3267.683 kb on - strandat 3267.683 kb on - strandat 3267.683 kb on - strandat 3267.686 kb on - strandat 3267.724 kb on - strandat 3267.750 kb on - strandat 3267.764 kb on - strandat 3267.774 kb on - strandat 3267.795 kb on - strandat 3267.795 kb on - strandat 3267.815 kb on + strandat 3267.815 kb on + strandat 3267.823 kb on - strandat 3267.844 kb on + strandat 3267.943 kb on - strandat 3267.960 kb on + strandat 3268.053 kb on + strandat 3268.054 kb on - strandat 3268.133 kb on - strandat 3268.133 kb on - strandat 3268.160 kb on - strandat 3268.679 kb on - strandat 3268.755 kb on + strandat 3268.762 kb on + strand, within garKat 3268.807 kb on - strand, within garKat 3268.807 kb on - strand, within garKat 3268.811 kb on + strand, within garKat 3268.854 kb on - strand, within garKat 3268.854 kb on - strand, within garKat 3268.944 kb on - strand, within garKat 3268.944 kb on - strand, within garKat 3268.949 kb on - strand, within garKat 3268.975 kb on + strand, within garKat 3269.003 kb on - strand, within garKat 3269.003 kb on - strand, within garKat 3269.018 kb on + strand, within garKat 3269.047 kb on + strand, within garKat 3269.080 kb on - strand, within garKat 3269.089 kb on + strand, within garKat 3269.137 kb on - strand, within garKat 3269.137 kb on - strand, within garKat 3269.155 kb on + strand, within garKat 3269.155 kb on + strand, within garKat 3269.185 kb on - strand, within garKat 3269.295 kb on + strand, within garKat 3269.357 kb on - strand, within garKat 3269.357 kb on - strand, within garKat 3269.359 kb on - strand, within garKat 3269.456 kb on + strand, within garKat 3269.474 kb on - strand, within garKat 3269.510 kb on - strand, within garKat 3269.613 kb on - strand, within garKat 3269.617 kb on + strand, within garKat 3269.629 kb on + strand, within garKat 3269.629 kb on + strand, within garKat 3269.801 kb on - strandat 3269.801 kb on - strandat 3269.830 kb on + strandat 3270.089 kb on + strand, within garRat 3270.089 kb on + strand, within garRat 3270.181 kb on + strand, within garRat 3270.206 kb on + strand, within garRat 3270.229 kb on + strand, within garRat 3270.235 kb on - strand, within garRat 3270.380 kb on + strand, within garRat 3270.380 kb on + strand, within garRat 3270.388 kb on - strand, within garRat 3270.395 kb on - strand, within garRat 3270.482 kb on - strand, within garRat 3270.509 kb on - strand, within garRat 3270.509 kb on - strand, within garRat 3270.568 kb on - strand, within garRat 3270.568 kb on - strand, within garRat 3270.587 kb on - strand, within garRat 3270.588 kb on + strand, within garRat 3270.608 kb on + strand, within garRat 3270.628 kb on - strand, within garRat 3270.679 kb on - strand, within garRat 3270.679 kb on - strand, within garRat 3270.767 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnC
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3,267,683 - -0.5
3,267,683 - +0.1
3,267,683 - +0.6
3,267,683 - +0.4
3,267,683 - -0.7
3,267,683 - +1.6
3,267,686 - -0.5
3,267,724 - +2.8
3,267,750 - -0.2
3,267,764 - -0.3
3,267,774 - +1.0
3,267,795 - +0.2
3,267,795 - -0.5
3,267,815 + -0.6
3,267,815 + +0.4
3,267,823 - -0.4
3,267,844 + +0.7
3,267,943 - -0.2
3,267,960 + +0.2
3,268,053 + -0.8
3,268,054 - -0.4
3,268,133 - -0.9
3,268,133 - +0.3
3,268,160 - -0.4
3,268,679 - -0.3
3,268,755 + -0.1
3,268,762 + garK b3124 0.10 +0.7
3,268,807 - garK b3124 0.14 -0.3
3,268,807 - garK b3124 0.14 -0.1
3,268,811 + garK b3124 0.14 -1.1
3,268,854 - garK b3124 0.18 +0.1
3,268,854 - garK b3124 0.18 +0.1
3,268,944 - garK b3124 0.26 -0.0
3,268,944 - garK b3124 0.26 +0.8
3,268,949 - garK b3124 0.26 -0.1
3,268,975 + garK b3124 0.29 +0.1
3,269,003 - garK b3124 0.31 -0.3
3,269,003 - garK b3124 0.31 -1.0
3,269,018 + garK b3124 0.32 -1.1
3,269,047 + garK b3124 0.35 -0.0
3,269,080 - garK b3124 0.38 +0.1
3,269,089 + garK b3124 0.39 -1.0
3,269,137 - garK b3124 0.43 +0.6
3,269,137 - garK b3124 0.43 +0.5
3,269,155 + garK b3124 0.44 +0.0
3,269,155 + garK b3124 0.44 -0.0
3,269,185 - garK b3124 0.47 -0.2
3,269,295 + garK b3124 0.57 +0.6
3,269,357 - garK b3124 0.62 +0.1
3,269,357 - garK b3124 0.62 -0.5
3,269,359 - garK b3124 0.62 -2.9
3,269,456 + garK b3124 0.71 -1.1
3,269,474 - garK b3124 0.72 -0.1
3,269,510 - garK b3124 0.75 -1.0
3,269,613 - garK b3124 0.84 +0.5
3,269,617 + garK b3124 0.85 +0.5
3,269,629 + garK b3124 0.86 -0.8
3,269,629 + garK b3124 0.86 +0.1
3,269,801 - -0.6
3,269,801 - -0.1
3,269,830 + -0.7
3,270,089 + garR b3125 0.23 +0.9
3,270,089 + garR b3125 0.23 -0.2
3,270,181 + garR b3125 0.33 +0.6
3,270,206 + garR b3125 0.36 -0.7
3,270,229 + garR b3125 0.38 -0.8
3,270,235 - garR b3125 0.39 +0.1
3,270,380 + garR b3125 0.55 -0.3
3,270,380 + garR b3125 0.55 -0.9
3,270,388 - garR b3125 0.56 +0.9
3,270,395 - garR b3125 0.57 -0.1
3,270,482 - garR b3125 0.67 -0.4
3,270,509 - garR b3125 0.70 +0.6
3,270,509 - garR b3125 0.70 +1.2
3,270,568 - garR b3125 0.77 -0.3
3,270,568 - garR b3125 0.77 -0.3
3,270,587 - garR b3125 0.79 +0.1
3,270,588 + garR b3125 0.79 +0.3
3,270,608 + garR b3125 0.81 -1.0
3,270,628 - garR b3125 0.84 -0.3
3,270,679 - garR b3125 0.89 +0.2
3,270,679 - garR b3125 0.89 +0.7
3,270,767 + +0.5

Or see this region's nucleotide sequence