Strain Fitness in Escherichia coli BW25113 around b2662

Experiment: Control_TnG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgabD and gabT are separated by 13 nucleotidesgabT and gabP are separated by 237 nucleotides b2661: gabD - succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI), at 2,789,295 to 2,790,743 gabD b2662: gabT - 4-aminobutyrate aminotransferase (NCBI), at 2,790,757 to 2,792,037 gabT b2663: gabP - gamma-aminobutyrate transporter (NCBI), at 2,792,275 to 2,793,675 gabP Position (kb) 2790 2791 2792 2793Strain fitness (log2 ratio) -2 -1 0 1 2at 2789.765 kb on - strand, within gabDat 2789.952 kb on - strand, within gabDat 2790.018 kb on + strand, within gabDat 2790.018 kb on + strand, within gabDat 2790.034 kb on - strand, within gabDat 2790.099 kb on + strand, within gabDat 2790.099 kb on + strand, within gabDat 2790.123 kb on + strand, within gabDat 2790.123 kb on + strand, within gabDat 2790.471 kb on + strand, within gabDat 2790.471 kb on + strand, within gabDat 2790.471 kb on - strand, within gabDat 2790.502 kb on + strand, within gabDat 2790.534 kb on - strand, within gabDat 2790.534 kb on - strand, within gabDat 2790.588 kb on + strand, within gabDat 2790.675 kb on + strandat 2790.922 kb on + strand, within gabTat 2791.013 kb on + strand, within gabTat 2791.077 kb on + strand, within gabTat 2791.085 kb on - strand, within gabTat 2791.085 kb on - strand, within gabTat 2791.088 kb on + strand, within gabTat 2791.183 kb on - strand, within gabTat 2791.183 kb on - strand, within gabTat 2791.223 kb on - strand, within gabTat 2791.324 kb on - strand, within gabTat 2791.454 kb on + strand, within gabTat 2791.462 kb on - strand, within gabTat 2791.487 kb on + strand, within gabTat 2791.509 kb on + strand, within gabTat 2791.532 kb on - strand, within gabTat 2791.597 kb on - strand, within gabTat 2791.597 kb on - strand, within gabTat 2791.688 kb on + strand, within gabTat 2791.862 kb on + strand, within gabTat 2791.862 kb on + strand, within gabTat 2791.952 kb on + strandat 2791.952 kb on + strandat 2791.952 kb on + strandat 2791.952 kb on + strandat 2791.954 kb on + strandat 2792.002 kb on - strandat 2792.011 kb on - strandat 2792.107 kb on - strandat 2792.107 kb on - strandat 2792.136 kb on - strandat 2792.136 kb on - strandat 2792.299 kb on + strandat 2792.498 kb on - strand, within gabPat 2792.569 kb on - strand, within gabPat 2792.576 kb on + strand, within gabPat 2792.669 kb on + strand, within gabPat 2792.680 kb on + strand, within gabPat 2792.681 kb on + strand, within gabPat 2792.681 kb on + strand, within gabPat 2792.687 kb on - strand, within gabPat 2792.735 kb on + strand, within gabPat 2792.735 kb on + strand, within gabPat 2792.791 kb on - strand, within gabPat 2792.815 kb on + strand, within gabPat 2792.815 kb on + strand, within gabPat 2792.815 kb on + strand, within gabPat 2792.821 kb on - strand, within gabPat 2792.839 kb on + strand, within gabPat 2792.839 kb on + strand, within gabPat 2792.849 kb on + strand, within gabPat 2792.881 kb on + strand, within gabPat 2792.884 kb on - strand, within gabPat 2792.889 kb on - strand, within gabPat 2792.901 kb on - strand, within gabPat 2792.926 kb on + strand, within gabPat 2792.995 kb on - strand, within gabPat 2793.010 kb on - strand, within gabPat 2793.010 kb on - strand, within gabP

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnG
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2,789,765 - gabD b2661 0.32 -0.2
2,789,952 - gabD b2661 0.45 -1.0
2,790,018 + gabD b2661 0.50 +0.3
2,790,018 + gabD b2661 0.50 +0.1
2,790,034 - gabD b2661 0.51 +1.3
2,790,099 + gabD b2661 0.55 +0.2
2,790,099 + gabD b2661 0.55 +0.1
2,790,123 + gabD b2661 0.57 -0.0
2,790,123 + gabD b2661 0.57 -0.1
2,790,471 + gabD b2661 0.81 +0.4
2,790,471 + gabD b2661 0.81 +1.3
2,790,471 - gabD b2661 0.81 -1.0
2,790,502 + gabD b2661 0.83 +0.6
2,790,534 - gabD b2661 0.86 +0.4
2,790,534 - gabD b2661 0.86 +1.4
2,790,588 + gabD b2661 0.89 -0.1
2,790,675 + +0.3
2,790,922 + gabT b2662 0.13 -0.6
2,791,013 + gabT b2662 0.20 -0.1
2,791,077 + gabT b2662 0.25 -0.3
2,791,085 - gabT b2662 0.26 -0.5
2,791,085 - gabT b2662 0.26 +0.1
2,791,088 + gabT b2662 0.26 -0.7
2,791,183 - gabT b2662 0.33 +1.9
2,791,183 - gabT b2662 0.33 +0.2
2,791,223 - gabT b2662 0.36 +0.4
2,791,324 - gabT b2662 0.44 +0.6
2,791,454 + gabT b2662 0.54 +0.7
2,791,462 - gabT b2662 0.55 +0.6
2,791,487 + gabT b2662 0.57 +0.2
2,791,509 + gabT b2662 0.59 +0.2
2,791,532 - gabT b2662 0.60 -0.3
2,791,597 - gabT b2662 0.66 +0.5
2,791,597 - gabT b2662 0.66 -0.4
2,791,688 + gabT b2662 0.73 +0.0
2,791,862 + gabT b2662 0.86 +0.5
2,791,862 + gabT b2662 0.86 -0.3
2,791,952 + +0.2
2,791,952 + +1.9
2,791,952 + +0.3
2,791,952 + +1.1
2,791,954 + -0.0
2,792,002 - -0.3
2,792,011 - -0.0
2,792,107 - +0.5
2,792,107 - +0.5
2,792,136 - -0.5
2,792,136 - +0.3
2,792,299 + -2.1
2,792,498 - gabP b2663 0.16 +0.2
2,792,569 - gabP b2663 0.21 -0.6
2,792,576 + gabP b2663 0.21 -0.3
2,792,669 + gabP b2663 0.28 -0.1
2,792,680 + gabP b2663 0.29 -0.8
2,792,681 + gabP b2663 0.29 -0.5
2,792,681 + gabP b2663 0.29 -1.7
2,792,687 - gabP b2663 0.29 -0.8
2,792,735 + gabP b2663 0.33 -0.5
2,792,735 + gabP b2663 0.33 -0.5
2,792,791 - gabP b2663 0.37 -0.6
2,792,815 + gabP b2663 0.39 +0.0
2,792,815 + gabP b2663 0.39 -0.1
2,792,815 + gabP b2663 0.39 -2.3
2,792,821 - gabP b2663 0.39 -0.5
2,792,839 + gabP b2663 0.40 +1.1
2,792,839 + gabP b2663 0.40 -0.5
2,792,849 + gabP b2663 0.41 +0.8
2,792,881 + gabP b2663 0.43 -0.2
2,792,884 - gabP b2663 0.43 +0.8
2,792,889 - gabP b2663 0.44 +1.1
2,792,901 - gabP b2663 0.45 -0.0
2,792,926 + gabP b2663 0.46 +0.6
2,792,995 - gabP b2663 0.51 +0.6
2,793,010 - gabP b2663 0.52 +0.1
2,793,010 - gabP b2663 0.52 -0.5

Or see this region's nucleotide sequence