Experiment: Control_TnG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihA and csrC are separated by 270 nucleotides csrC and yihI are separated by 66 nucleotides yihI and hemN are separated by 188 nucleotides
b3865: yihA - GTP-binding protein (RefSeq), at 4,048,156 to 4,048,788
yihA
b4457: csrC - regulatory RNA (NCBI), at 4,049,059 to 4,049,303
csrC
b3866: yihI - hypothetical protein (NCBI), at 4,049,370 to 4,049,879
yihI
b3867: hemN - O2-independent coproporphyrinogen III oxidase (VIMSS), at 4,050,068 to 4,051,441
hemN
Position (kb)
4049
4050 Strain fitness (log2 ratio)
-2
-1
0
1 at 4048.117 kb on + strand at 4048.201 kb on - strand at 4048.831 kb on - strand at 4048.859 kb on + strand at 4049.048 kb on + strand at 4049.048 kb on + strand at 4049.064 kb on - strand at 4049.100 kb on + strand, within csrC at 4049.125 kb on - strand, within csrC at 4049.181 kb on + strand, within csrC at 4049.212 kb on + strand, within csrC at 4049.246 kb on + strand, within csrC at 4049.261 kb on - strand, within csrC at 4049.261 kb on - strand, within csrC at 4049.352 kb on + strand at 4049.352 kb on + strand at 4049.391 kb on - strand at 4049.398 kb on + strand at 4049.537 kb on - strand, within yihI at 4049.537 kb on - strand, within yihI at 4049.546 kb on - strand, within yihI at 4049.599 kb on - strand, within yihI at 4049.599 kb on - strand, within yihI at 4049.607 kb on - strand, within yihI at 4049.607 kb on - strand, within yihI at 4049.632 kb on - strand, within yihI at 4049.661 kb on + strand, within yihI at 4049.687 kb on + strand, within yihI at 4049.688 kb on - strand, within yihI at 4049.718 kb on - strand, within yihI at 4049.755 kb on - strand, within yihI at 4049.755 kb on - strand, within yihI at 4049.758 kb on + strand, within yihI at 4049.804 kb on + strand, within yihI at 4049.872 kb on - strand at 4049.897 kb on - strand at 4049.899 kb on + strand at 4049.939 kb on + strand at 4049.953 kb on - strand at 4049.982 kb on + strand at 4050.064 kb on + strand at 4050.064 kb on + strand at 4050.138 kb on + strand at 4050.138 kb on + strand at 4050.172 kb on - strand at 4050.204 kb on - strand at 4050.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnG remove 4,048,117 + -0.0 4,048,201 - +0.3 4,048,831 - -0.8 4,048,859 + -0.5 4,049,048 + -0.4 4,049,048 + -0.2 4,049,064 - +0.1 4,049,100 + csrC b4457 0.17 +0.5 4,049,125 - csrC b4457 0.27 -0.2 4,049,181 + csrC b4457 0.50 -1.3 4,049,212 + csrC b4457 0.62 -1.2 4,049,246 + csrC b4457 0.76 +0.1 4,049,261 - csrC b4457 0.82 -0.1 4,049,261 - csrC b4457 0.82 -0.9 4,049,352 + -0.9 4,049,352 + +0.5 4,049,391 - +0.1 4,049,398 + +1.2 4,049,537 - yihI b3866 0.33 -0.2 4,049,537 - yihI b3866 0.33 +0.2 4,049,546 - yihI b3866 0.35 +0.3 4,049,599 - yihI b3866 0.45 -1.0 4,049,599 - yihI b3866 0.45 +0.3 4,049,607 - yihI b3866 0.46 -0.4 4,049,607 - yihI b3866 0.46 -0.1 4,049,632 - yihI b3866 0.51 -0.7 4,049,661 + yihI b3866 0.57 +0.4 4,049,687 + yihI b3866 0.62 -0.3 4,049,688 - yihI b3866 0.62 -0.4 4,049,718 - yihI b3866 0.68 +1.3 4,049,755 - yihI b3866 0.75 -0.1 4,049,755 - yihI b3866 0.75 -0.0 4,049,758 + yihI b3866 0.76 -1.8 4,049,804 + yihI b3866 0.85 +0.2 4,049,872 - -1.4 4,049,897 - -0.6 4,049,899 + -0.2 4,049,939 + -0.5 4,049,953 - -0.2 4,049,982 + +0.6 4,050,064 + +0.1 4,050,064 + +0.1 4,050,138 + +0.6 4,050,138 + -1.1 4,050,172 - +0.1 4,050,204 - +0.6 4,050,204 - -0.1
Or see this region's nucleotide sequence