Experiment: Control_TnG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exuT and exuR are separated by 129 nucleotides exuR and yqjA are separated by 344 nucleotides
b3093: exuT - hexuronate transporter (NCBI), at 3,243,126 to 3,244,544
exuT
b3094: exuR - negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS), at 3,244,674 to 3,245,450
exuR
b3095: yqjA - conserved inner membrane protein (NCBI), at 3,245,795 to 3,246,457
yqjA
Position (kb)
3244
3245
3246 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3243.720 kb on - strand, within exuT at 3243.777 kb on - strand, within exuT at 3243.867 kb on - strand, within exuT at 3243.881 kb on + strand, within exuT at 3243.899 kb on - strand, within exuT at 3243.911 kb on + strand, within exuT at 3243.911 kb on + strand, within exuT at 3243.968 kb on + strand, within exuT at 3244.006 kb on + strand, within exuT at 3244.035 kb on - strand, within exuT at 3244.035 kb on - strand, within exuT at 3244.067 kb on + strand, within exuT at 3244.067 kb on + strand, within exuT at 3244.131 kb on - strand, within exuT at 3244.144 kb on + strand, within exuT at 3244.144 kb on + strand, within exuT at 3244.176 kb on + strand, within exuT at 3244.178 kb on + strand, within exuT at 3244.208 kb on + strand, within exuT at 3244.474 kb on - strand at 3244.474 kb on - strand at 3244.496 kb on + strand at 3244.505 kb on + strand at 3244.577 kb on - strand at 3244.577 kb on - strand at 3244.621 kb on - strand at 3244.621 kb on - strand at 3244.651 kb on + strand at 3244.664 kb on - strand at 3244.668 kb on - strand at 3244.689 kb on - strand at 3244.742 kb on - strand at 3244.860 kb on - strand, within exuR at 3245.058 kb on - strand, within exuR at 3245.058 kb on - strand, within exuR at 3245.086 kb on - strand, within exuR at 3245.086 kb on - strand, within exuR at 3245.098 kb on - strand, within exuR at 3245.168 kb on + strand, within exuR at 3245.168 kb on + strand, within exuR at 3245.183 kb on - strand, within exuR at 3245.200 kb on + strand, within exuR at 3245.217 kb on - strand, within exuR at 3245.299 kb on + strand, within exuR at 3245.299 kb on + strand, within exuR at 3245.376 kb on - strand at 3245.415 kb on + strand at 3245.420 kb on + strand at 3245.512 kb on + strand at 3245.514 kb on + strand at 3245.522 kb on - strand at 3245.532 kb on - strand at 3245.536 kb on + strand at 3245.536 kb on + strand at 3245.546 kb on + strand at 3245.546 kb on + strand at 3245.554 kb on - strand at 3245.554 kb on - strand at 3245.556 kb on - strand at 3245.607 kb on + strand at 3245.651 kb on + strand at 3245.676 kb on + strand at 3245.678 kb on + strand at 3245.679 kb on - strand at 3245.684 kb on - strand at 3245.684 kb on - strand at 3245.684 kb on - strand at 3245.690 kb on - strand at 3245.695 kb on + strand at 3245.712 kb on - strand at 3245.726 kb on + strand at 3245.856 kb on + strand at 3245.914 kb on - strand, within yqjA at 3245.923 kb on - strand, within yqjA at 3245.950 kb on - strand, within yqjA at 3246.000 kb on - strand, within yqjA at 3246.005 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.070 kb on + strand, within yqjA at 3246.082 kb on - strand, within yqjA at 3246.082 kb on - strand, within yqjA at 3246.097 kb on - strand, within yqjA at 3246.097 kb on - strand, within yqjA at 3246.128 kb on - strand, within yqjA at 3246.128 kb on - strand, within yqjA at 3246.159 kb on + strand, within yqjA at 3246.159 kb on + strand, within yqjA at 3246.196 kb on + strand, within yqjA at 3246.204 kb on - strand, within yqjA at 3246.233 kb on + strand, within yqjA at 3246.233 kb on + strand, within yqjA at 3246.280 kb on + strand, within yqjA at 3246.286 kb on + strand, within yqjA at 3246.288 kb on - strand, within yqjA at 3246.288 kb on - strand, within yqjA at 3246.310 kb on - strand, within yqjA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnG remove 3,243,720 - exuT b3093 0.42 +0.2 3,243,777 - exuT b3093 0.46 +0.2 3,243,867 - exuT b3093 0.52 -0.3 3,243,881 + exuT b3093 0.53 +0.1 3,243,899 - exuT b3093 0.54 +0.1 3,243,911 + exuT b3093 0.55 -0.6 3,243,911 + exuT b3093 0.55 +0.7 3,243,968 + exuT b3093 0.59 +0.1 3,244,006 + exuT b3093 0.62 +0.2 3,244,035 - exuT b3093 0.64 -0.6 3,244,035 - exuT b3093 0.64 +0.6 3,244,067 + exuT b3093 0.66 -0.4 3,244,067 + exuT b3093 0.66 -0.3 3,244,131 - exuT b3093 0.71 +0.4 3,244,144 + exuT b3093 0.72 -0.8 3,244,144 + exuT b3093 0.72 -0.9 3,244,176 + exuT b3093 0.74 -0.2 3,244,178 + exuT b3093 0.74 +0.2 3,244,208 + exuT b3093 0.76 -0.0 3,244,474 - +0.3 3,244,474 - +0.5 3,244,496 + -0.2 3,244,505 + +0.0 3,244,577 - -0.0 3,244,577 - -0.1 3,244,621 - -0.1 3,244,621 - -1.2 3,244,651 + +0.2 3,244,664 - -0.6 3,244,668 - -1.1 3,244,689 - +0.1 3,244,742 - +0.1 3,244,860 - exuR b3094 0.24 -0.8 3,245,058 - exuR b3094 0.49 +0.1 3,245,058 - exuR b3094 0.49 -0.6 3,245,086 - exuR b3094 0.53 +0.4 3,245,086 - exuR b3094 0.53 -1.0 3,245,098 - exuR b3094 0.55 -1.0 3,245,168 + exuR b3094 0.64 +2.7 3,245,168 + exuR b3094 0.64 +0.3 3,245,183 - exuR b3094 0.66 -0.9 3,245,200 + exuR b3094 0.68 -1.3 3,245,217 - exuR b3094 0.70 -0.9 3,245,299 + exuR b3094 0.80 -1.0 3,245,299 + exuR b3094 0.80 +0.6 3,245,376 - -0.7 3,245,415 + -0.6 3,245,420 + +0.7 3,245,512 + -0.1 3,245,514 + +0.7 3,245,522 - -0.2 3,245,532 - -1.0 3,245,536 + +0.3 3,245,536 + -0.1 3,245,546 + -0.2 3,245,546 + +0.3 3,245,554 - +0.2 3,245,554 - +0.1 3,245,556 - +0.7 3,245,607 + +0.6 3,245,651 + +0.8 3,245,676 + -0.0 3,245,678 + +0.5 3,245,679 - +0.2 3,245,684 - -0.1 3,245,684 - +0.5 3,245,684 - -0.0 3,245,690 - -0.0 3,245,695 + +0.4 3,245,712 - +0.2 3,245,726 + -1.9 3,245,856 + +1.4 3,245,914 - yqjA b3095 0.18 +0.3 3,245,923 - yqjA b3095 0.19 +0.2 3,245,950 - yqjA b3095 0.23 +0.1 3,246,000 - yqjA b3095 0.31 -0.8 3,246,005 - yqjA b3095 0.32 -0.5 3,246,059 - yqjA b3095 0.40 -0.3 3,246,059 - yqjA b3095 0.40 +0.1 3,246,059 - yqjA b3095 0.40 -0.0 3,246,059 - yqjA b3095 0.40 -0.3 3,246,070 + yqjA b3095 0.41 -0.2 3,246,082 - yqjA b3095 0.43 -0.3 3,246,082 - yqjA b3095 0.43 +0.4 3,246,097 - yqjA b3095 0.46 +0.5 3,246,097 - yqjA b3095 0.46 +0.1 3,246,128 - yqjA b3095 0.50 -1.0 3,246,128 - yqjA b3095 0.50 -0.3 3,246,159 + yqjA b3095 0.55 -0.3 3,246,159 + yqjA b3095 0.55 -0.8 3,246,196 + yqjA b3095 0.60 -0.9 3,246,204 - yqjA b3095 0.62 +0.1 3,246,233 + yqjA b3095 0.66 -0.3 3,246,233 + yqjA b3095 0.66 -0.5 3,246,280 + yqjA b3095 0.73 -0.3 3,246,286 + yqjA b3095 0.74 -0.5 3,246,288 - yqjA b3095 0.74 -1.0 3,246,288 - yqjA b3095 0.74 +0.4 3,246,310 - yqjA b3095 0.78 -0.1
Or see this region's nucleotide sequence